Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0511 ATGGCGAAAATGTCTCAAGAAAGCGATTTTGAATCCATGGCCATGGAGAATAACTACATTCTAGAAGATTCCATTATGAAGGCTTTGGCATTCGATCTCTTATCCGGGTTCTTAGATTCTGAGGTAAGAGAGCTCGACAATTTCATGGATACCCTTCAATCAAAAATCATTGATGCCCATCAAAAAATATCTTCTTCCGGACAAGCTAAAGACCTAGTCAATTTGGTGGAAGAGAAATTGCGAGATTCCGAAGAATCCTTGAAGCAATCTAGGCAGCAGATTCTAGAAGTTATGATGCAATCGTCCAAGTTGCAAAGATTTGTTTTGGCTCTTGGATATGGAAATTGGGAGTTTAACCGGGGAGTGGATTTATTGGAAACGGGTCGAGAATTCAAGATTAATGGAAAATCAAACACAAAGATGACAGAACAACAAAGACATATTCTTAGGATGTTAGAAAAGTCGCTAGAAAGGGAGCTAGATCTTGAGAAGAAGTTGTCTGAATCAAGACAAAGGGAAGAGGATTTGAGATTGAAGTTGCATTATACCGAACAAGTATCATTTCGCATGGAAGAAGCTTCAGAAGTTGTTTGGGGTAGATTTCTAGAAGCCGAAAATGGTGCTGAGGTACTTATGGGAATTTCAAAGGAATTAGTCAACCGTCTTCAGCTCATCCAGTTCAATTTGAACAGCTCAATTCAACGAGAAAGTGAGTTAAAATCACAATTCGAAAAATCGGTAGATCAGATTAAGGAAAAAAACCTTTCTTTACAAAGGCTTGAAAGCAGCAAAGCCGAACATATTTCAGAAAATACACAGCAGGTGAAGAAACTGAGAGAAGAAGTTAAATCTCTTCAAGAGCAAGTTAAAGCGGCAAAAATGGATCTGAAAAACGCATATTCTGAAATGGAGACAAATCAAGAGCAACTTAACGAAATGGAAAATCTAGTTGAGTCATTAAAGGAAAGCCTGTGCATGGCAGAAAGTAGGGCCGAAAATGCAGAAACTAAGCTTACCCAATTGACAGAAACAAATGCAGAACTTAATGAAGAGGTGAACTTTCTTAAAGAGAGTGCTAGTAACAAAGAGAAAAAGGTGGGATCGCTTGAGCAACAGTTGAGGGAAATGGAGGTCCAGTTTCAAAATGCTAAGGTATCTTCCGAAGCAAGTCAAGAGCAGCAGAATATGTTGTATGCTGCGATTTGGGACATGGAGACGCTTATTGAAGATCTAAAATCGAAGGTTTCAAAAGCAGAAAGTAAAGTGGATAATGCAGAGGAGCGATGTATTTTGGTGTCTGAAACTAATGACGAACTTAGTAAAGAAGTTGATTCTTTAAGGTCTAGATTAGATGAGTTGGAGACATCACTGGATCGGGCTGCTGAGGAGAAGTTTTCTAACGCGAAGGAGATTAATTTGAGGACCAAGTTTATTATGGATATGGTGCTGCAGCTAACAATCGAAAGGGAAAGAATCCAGAAGCAGGTTTCTATTTTGACAAACGAGAACAAGGCTTTGATGAATAAAATTACGGTATATGAAAAATCGACGCTGCGGTAG 1560 38.85 MAKMSQESDFESMAMENNYILEDSIMKALAFDLLSGFLDSEVRELDNFMDTLQSKIIDAHQKISSSGQAKDLVNLVEEKLRDSEESLKQSRQQILEVMMQSSKLQRFVLALGYGNWEFNRGVDLLETGREFKINGKSNTKMTEQQRHILRMLEKSLERELDLEKKLSESRQREEDLRLKLHYTEQVSFRMEEASEVVWGRFLEAENGAEVLMGISKELVNRLQLIQFNLNSSIQRESELKSQFEKSVDQIKEKNLSLQRLESSKAEHISENTQQVKKLREEVKSLQEQVKAAKMDLKNAYSEMETNQEQLNEMENLVESLKESLCMAESRAENAETKLTQLTETNAELNEEVNFLKESASNKEKKVGSLEQQLREMEVQFQNAKVSSEASQEQQNMLYAAIWDMETLIEDLKSKVSKAESKVDNAEERCILVSETNDELSKEVDSLRSRLDELETSLDRAAEEKFSNAKEINLRTKFIMDMVLQLTIERERIQKQVSILTNENKALMNKITVYEKSTLR 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2441143 2444095 - Conep09aG0052100.1 Cone9ag0511 444674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0511 519 Coils Coil 268 323 - -
Cone9ag0511 519 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 4 515 IPR039976 -
Cone9ag0511 519 Coils Coil 482 509 - -
Cone9ag0511 519 Coils Coil 233 253 - -
Cone9ag0511 519 Coils Coil 331 386 - -
Cone9ag0511 519 Coils Coil 401 463 - -
Cone9ag0511 519 Coils Coil 73 93 - -
Cone9ag0511 519 Gene3D - 327 467 - -
Cone9ag0511 519 SUPERFAMILY Tropomyosin 248 460 - -
Cone9ag0511 519 Coils Coil 152 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0511 K27867 - - csv:101222192 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0343 Cone-Chr11:1677723 Cone9ag0511 Cone-Chr9:2441143 2.29E-44 wgd
Cone18ag1159 Cone-Chr18:8326126 Cone9ag0511 Cone-Chr9:2441143 4.74E-40 wgd
Cone6ag0498 Cone-Chr6:2484422 Cone9ag0511 Cone-Chr9:2441143 1.46E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1011 . Blo16g01071 . Bda11g01160 Bpe13g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0511 . . . . . . . Bda11g01160 . . . Bma06g00749 . . Cmo15g00878 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006325 1 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 38