Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0512 ATGGAAATGGGTGAGAATGATAACTTTGAACAAGAAAATAGGACTGAAGAAGAAGATCCCATGAACTATTCATCTAGCATACCCTCAGCTTGGCGATTCAACAACGGTTCTATGAATCTCACCAGTTCATCATCAATGGGTTTGGTTAGAAATGAGGGTCATGTTGTTTCTTCTTCTTATTCCTCTACGGCATTGGTGGATCCTACTACTACCCTTTGGGACCAACCAACTAACATTCAAATCTCGGCATTTCACAATGTTAATATCCCGGAAAATTTGATCATGAAAGGCGGAGTTTTCTTGCCAAATATGCATGGAATGCTTCCACCTAGTTTATCTCAATTTCCTGCCGATTCTGCATTCATAGAGCGGGCTGCAAGGTTTTCATGCTTCAATGTTGGAAGTTTTGGAGATATTGCTACTACCCCTTTCAACCTTCCGGAATCTGTGGCACTTTATTCTAGAGGTGTTGGTCCGGTCCATGAGCCCCCGCCCTACGAGGCTTATCCCAACAATGGGTTGAGGCTAAGTAACGAGCGAAACACCAGTGAAGCTTCGAAAGATGCTTGTATGGAAGTTGAGGCTAGTGAAAAGAGTCCAATTAAGAATGATAGGAGGTGTGAGAGCCTTGTGAGGTCTCAAGATGAAGTGAAGCAAGGTGTTGTTGGTGGGTCCAGTAATGGGTCTGATGGGGCCGAGTTTAGTGGTGCTGCTGCTGCTGCAGGTCAAGATGAATCGCATATGTTGGAAGATACTATAGTTGGAGGACCTTCTCATAAGGGGCTTGGCTCAAAGAAGAGGAAAAGGGGCGGCCAGAATTCTGAAGTTGATCAAGCAAGAGACTCTCCTTGTCAGAAAGGGGAATCTGTAAAGGATGAGATGGAGATTCAAAAGAAGGAAACCCAAACCCCAAGTTCAACCACTAATAGAGCTACAGGAAAACATTTTAAACAAGGATCTCCTGCTTCAGATCCGCCCAAGCAAGAATATATTCATGTCAGAGCTAGAAGAGGCCAGGCAACAAACAGCCATAGTCTGGCAGAGAGAGTAAGAAGGGAAAAGATTAGTGAAAGGATGAAGTTCCTTCAGGACCTTGTACCAGGGTGCAGCAAGGTAACTGGCAAGGCAGTAATGCTAGATGAAATTATTAACTATGTACAATCTCTGCAACGACAAGTTGAGTTTTTGTCGATGAAACTTGCATCGGTCCATCCATGGCTCGATTTCAACATTGAAGAGCTACTGACCAAAGATATTCTTCAATCACGGGCTGGTTCATCTCCTACAATGCCATTCACTACAGATATGCTTATGCCTTATCCTCCACTCCATCCATCTCCTCACGGACTAATCTCATCCGATCTTCCTTGCATGGGCGCTGCTTCAGATATTTTACGAAGAACCATTAATTCCCAATTGACAATACCCACAACTGGTCCTGACTTTAAGGAACCTGCTCAGCTGCCCAATGTGTGGGAGGATGAGCTCCATAATGCTGTTCAGTCCTTTGGAACCCCTGCTCAGTCCAATAGCCAAGATGTGGATGGCTCTCCACAAGCTGATACAAAAGTTGAACTGTGA 1581 44.53 MEMGENDNFEQENRTEEEDPMNYSSSIPSAWRFNNGSMNLTSSSSMGLVRNEGHVVSSSYSSTALVDPTTTLWDQPTNIQISAFHNVNIPENLIMKGGVFLPNMHGMLPPSLSQFPADSAFIERAARFSCFNVGSFGDIATTPFNLPESVALYSRGVGPVHEPPPYEAYPNNGLRLSNERNTSEASKDACMEVEASEKSPIKNDRRCESLVRSQDEVKQGVVGGSSNGSDGAEFSGAAAAAGQDESHMLEDTIVGGPSHKGLGSKKRKRGGQNSEVDQARDSPCQKGESVKDEMEIQKKETQTPSSTTNRATGKHFKQGSPASDPPKQEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVHPWLDFNIEELLTKDILQSRAGSSPTMPFTTDMLMPYPPLHPSPHGLISSDLPCMGAASDILRRTINSQLTIPTTGPDFKEPAQLPNVWEDELHNAVQSFGTPAQSNSQDVDGSPQADTKVEL 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2454901 2458986 + Conep09aG0052200.1 Cone9ag0512 444675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0512 526 MobiDBLite consensus disorder prediction 1 26 - -
Cone9ag0512 526 MobiDBLite consensus disorder prediction 499 526 - -
Cone9ag0512 526 FunFam Basic helix-loop-helix transcription factor 336 408 - -
Cone9ag0512 526 CDD bHLH_AtBPE_like 329 414 - -
Cone9ag0512 526 MobiDBLite consensus disorder prediction 268 299 - -
Cone9ag0512 526 Pfam Helix-loop-helix DNA-binding domain 342 390 IPR011598 GO:0046983(InterPro)
Cone9ag0512 526 MobiDBLite consensus disorder prediction 168 327 - -
Cone9ag0512 526 SMART finulus 345 395 IPR011598 GO:0046983(InterPro)
Cone9ag0512 526 MobiDBLite consensus disorder prediction 300 316 - -
Cone9ag0512 526 Gene3D - 336 406 IPR036638 GO:0046983(InterPro)
Cone9ag0512 526 MobiDBLite consensus disorder prediction 501 518 - -
Cone9ag0512 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983(InterPro)
Cone9ag0512 526 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 112 446 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone9ag0512 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 408 IPR036638 GO:0046983(InterPro)
Cone9ag0512 526 MobiDBLite consensus disorder prediction 181 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1155 Cone-Chr12:9213888 Cone9ag0512 Cone-Chr9:2454901 1.61E-52 dispersed
Cone8ag1204 Cone-Chr8:10239336 Cone9ag0512 Cone-Chr9:2454901 5.79E-50 dispersed
Cone9ag0295 Cone-Chr9:1266883 Cone9ag0512 Cone-Chr9:2454901 4.61E-08 dispersed
Cone9ag0512 Cone-Chr9:2454901 Cone10ag1041 Cone-Chr10:7267596 5.71E-09 dispersed
Cone13ag0883 Cone-Chr13:7839782 Cone9ag0512 Cone-Chr9:2454901 1.03E-101 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone9ag0512 Cone-Chr9:2454901 3.06E-99 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone9ag0512 Cone-Chr9:2454901 4.26E-16 wgd
Cone6ag0499 Cone-Chr6:2493438 Cone9ag0512 Cone-Chr9:2454901 2.13E-252 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46800 PF00117 GATase 3.30E-48 CL0014 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0512 - - - 0.0