Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0515 ATGGCTCCAGTCCTTAGCCGAAGTTTGGCCTCTGCTTCTTTAGCTCCACTCCCTTCTTCCTCCTTCCCTGTTCGAAACACTGACAGGGCTTTGAGCCTTACAAGTGCTTTCGTACCCCAAAATTGGCTTAAAGATGGCTTCTCCTGTAGTGGATTGAAATGGAAGCTCGTCAGGAAGAACAATCGGATTGATGTCCGGTGTGAGGTAGCTGTGGCCGAGAAAGAAGCTGCTGAGACGCCCGGTGGTGAAAAGTTCGAGTACCAAGCCGAGGTGAGCCGCCTGTTGGATTTGATTGTTCATAGTCTATACAGTCACAAGGAAGTCTTCCTTAGAGAGCTCGTGAGTAATGCTAGTGATGCGTTAGACAAGTTGAGATTCTTAAGTGTGACTGAGCCGTCTCTGCTAGGAGATGCTGGTGACCTTGAAATTCGTATCAAGACCGATGCAGACAATGGGATCATTACCATAACAGACACTGGTATTGGAATGACTAAAGAAGAACTCATTGATTGTCTTGGAACCATTGCCCAGAGTGGAACTTCGAAATTCTTAAAGGCGCTTAAGGAAAACCAGGATCATCTTGGTGGAGACAATGGTTTGATTGGCCAGTTTGGTGTTGGATTCTATTCTGCTTTTCTTGTGGCCGAGAAGGTGGTCGTATCTACAAAAAGCCCGAAGTCTGATAAGCAATATGTTTGGGAAGCACTAGCTGATAATAGCTCCTATGTGATTAGGGAAGAAACTGATCCAGAGAAAATCTTGCACCGTGGAACACAAATCACACTCTATTTAAGGGAGGACGACAAGTATGAATTCTCGGACCCGGCCAGGATTCAAGGTCTGGTCAATAATTACTCACAGTTTGTTTCCTTCCCCATTTATACATGGCAAGAAAATCAAGAACTATTGAGGTCAGTGGAAGAAGAGGAAGAACCAAAAGAAGGAGAAGAGTCACCAGAGGGAGAGAAGAAAAAAAAGAAGACAACTAAAACTGAGAAGTATTGGGACTGGGAATTAGCAAATGAAACCAAGCCAATTTGGATGCGAAACCCAAAGGAAGTTTCGAAGGAAGAGTACAATGAATTTTATAAGAAGGCATTTAATGAATTTTTAGACCCACTTGGTCATGCTCACTTTACCACTGAGGGTGAGGTGGAGTTTAGGAGTGTTCTTTATATTCCTGGAATGGGGCCTCTTAACAATGAGGATGTCGTAAATCCAAAAACTAAGAACATTCGTCTATACGTTAAGCGAGTCTTTATCTCTGATGATTTTGATGGTGAGCTGTTCCCGCGGTACTTGAGCTTTGTGAGAGGTGTGGTGGATTCTAATGATCTTCCCCTTAATGTTTCTCGAGAGATTCTCCAAGAAAGCCGAATTGTAAGAATAATGAGAAAGAGACTCGTCAGGAAAACATTCGATATGATTCAAGATATTTCTGAAGGTGAAAATAAAGAGGACTACAAGAAATTTTGGGAAACTTTTGGCCGGTTTTTGAAGTTGGGTTGTATTGAGGATTCTGGAAATCACAAGCGTATAACACCTCTACTGCGGTTTTTCACTTCCAAAAGTGAAGAGGAGTTGGTAAGTTTAGATGATTATGTTGAAAACATGGGTGAGAACCAAAAGGCCATCTATTACTTGGCAACAGACAGCTTGAAAAGTGCAAAGACTGCTCCATTCTTGGAGAAGTTGGTCCAAAAAGATATTGAGGTTCTGTACTTGATTGAGCCGATTGACGAAGTTGCGATCCAGAACCTGCAGACATATAAAGAGAATAAATTTGTTGATATTAGCAAGGAAGATTTAGAACTGGGTGATGAGGACGAGGTCAAAGATAGAGAAGCCAAGCAAGAGTATAATCTCCTCTGTGACTGGATTAAGCAACAATTGGGAGATAAGGTAGCAAAAGTCCAAGTCTCCAACCGCCTAAGCTCATCTCCCTGTGTCCTAGTTTCTGGCAAGTTTGGTTGGTCTGCCAATATGGAAAGGTTGATGAAGGCTCAAGCTCTTGGAGATACCGCAAGTCTAGATTTTATGCGGGGAAGGAGAATATTGGAAATCAACCCCGATCATCCCATCATCAAAGACCTTAATGCTGCTTGCAAGAGTGAACCTGAAAGCAGTGATGCTACAAGAGCCGTTGATCTCTTATATGACACAGCATTGATTTCCAGTGGATTCTCTCCTGATAGCCCAGCTGAGTTGGGGGGTAAGATATATGAGATGATGGCAATGGCGCTTGGAGGAAGGTGGGGTAGATTGGAAGAGGAGACTGAGATTGAAGAAGATGGAGAGTCTAATGAGGCCCCCAGCGCGGTTGAATCCTACGAGGTGGAAGTGGTTGAGCCATCAGAAGTGAGGGAAGCAAGTGACCCTTGGCAGGAGTAG 2391 43.58 MAPVLSRSLASASLAPLPSSSFPVRNTDRALSLTSAFVPQNWLKDGFSCSGLKWKLVRKNNRIDVRCEVAVAEKEAAETPGGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKTDADNGIITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALKENQDHLGGDNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWEALADNSSYVIREETDPEKILHRGTQITLYLREDDKYEFSDPARIQGLVNNYSQFVSFPIYTWQENQELLRSVEEEEEPKEGEESPEGEKKKKKTTKTEKYWDWELANETKPIWMRNPKEVSKEEYNEFYKKAFNEFLDPLGHAHFTTEGEVEFRSVLYIPGMGPLNNEDVVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVRGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISEGENKEDYKKFWETFGRFLKLGCIEDSGNHKRITPLLRFFTSKSEEELVSLDDYVENMGENQKAIYYLATDSLKSAKTAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTYKENKFVDISKEDLELGDEDEVKDREAKQEYNLLCDWIKQQLGDKVAKVQVSNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTASLDFMRGRRILEINPDHPIIKDLNAACKSEPESSDATRAVDLLYDTALISSGFSPDSPAELGGKIYEMMAMALGGRWGRLEEETEIEEDGESNEAPSAVESYEVEVVEPSEVREASDPWQE 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2463417 2468419 - Conep09aG0052500.1 Cone9ag0515 444678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0515 796 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 109 245 - -
Cone9ag0515 796 PIRSF HSP90_HTPG 59 786 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone9ag0515 796 FunFam Heat shock protein 90 alpha 601 749 - -
Cone9ag0515 796 Gene3D - 514 600 - -
Cone9ag0515 796 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 299 IPR036890 -
Cone9ag0515 796 MobiDBLite consensus disorder prediction 755 796 - -
Cone9ag0515 796 SUPERFAMILY Ribosomal protein S5 domain 2-like 343 601 IPR020568 -
Cone9ag0515 796 FunFam heat shock protein 90-5, chloroplastic 70 315 - -
Cone9ag0515 796 Gene3D - 601 748 IPR037196 -
Cone9ag0515 796 ProSitePatterns Heat shock hsp90 proteins family signature. 103 112 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone9ag0515 796 MobiDBLite consensus disorder prediction 305 327 - -
Cone9ag0515 796 Gene3D - 341 513 - -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 83 103 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 104 126 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 275 293 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 256 273 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 153 170 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 171 188 IPR020575 -
Cone9ag0515 796 PRINTS 90kDa heat shock protein signature 201 223 IPR020575 -
Cone9ag0515 796 SMART HKATPase_4 105 268 IPR003594 -
Cone9ag0515 796 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 65 763 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0009570(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone9ag0515 796 FunFam heat shock protein 90-5, chloroplastic 341 513 - -
Cone9ag0515 796 Pfam Hsp90 protein 271 768 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone9ag0515 796 CDD HATPase_Hsp90-like 92 289 IPR020575 -
Cone9ag0515 796 FunFam Heat shock protein 90 514 600 - -
Cone9ag0515 796 Hamap Chaperone protein HtpG [htpG]. 72 745 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone9ag0515 796 Gene3D - 77 311 IPR036890 -
Cone9ag0515 796 SUPERFAMILY HSP90 C-terminal domain 623 744 IPR037196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0515 K09487 - - vvi:100264968 1261.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1384 Cone-Chr8:10961541 Cone9ag0515 Cone-Chr9:2463417 0 dispersed
Cone6ag0501 Cone-Chr6:2499100 Cone9ag0515 Cone-Chr9:2463417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1005 Blo01g00465 . Bda01g01785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0515 . . . . . . . . . Bpe02g01962 Bma01g00137 . . . Cmo15g00882 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001704 2 2 2 3 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 3 2 2 3 2 2 70