Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0519 | ATGAGGACCGGGAAGAGCAATAGGGAAGATGAAGAGTATGAAGAGGATGAGTTCGATTCTAAGAAAGAAGGACCTTCTTCAGCTTCTGCTGCTAATAATAGCAACAATAGCAACAGTAAAGGAGATGCTAAGAACAATGATAAGGCTAATGCACTACGTTCCAAGCATTCTGTCACAGAGCAGCGTAGAAGAAGCAAGATTAATGAGAGATTCCAGATATTGAGAGATCTAATACCGCACAGTGATCAAAAGAGAGATACAGCTTCATTCCTATTGGAGGTAATTGAGTATGTACAATATTTACAGGGAAGGGTACAAAAGTATGAGGGTTCATATCAGAGCTGGAGTGGGGAGCCGACCAAGTTAATTCCATGGAGAAACAGTCATTGGCACATCCAAAATTTTGTCGGTTACCCAGAAGCTGCAAAGAATGGTTCTGCTCCTGGATCAACCTTCCCAGGGAAATTTGATGAGAACAATAATACTATCTCGCCAGCTTTACTCAAGGGCTCAAAAAATCTGGTGGAGTCTGATCCTTGCAGGGTTACAGCAGAGCAAGCTGAAATACAAAATAAAGGAATATCACCACTATCTCTGCCTCTGCAGGCAAACATACCTGTTCCTAATGGTATGCCTGCCCAACCTCAACATAGATCGATTAGTGATGCCCAGTCAAGTGGGGGCCGTCCAACAACAGATACACTGAACCAGCAAGATGAGATGACAATTGAAGGAGGGACAATTAGCATCTCAAGTGCGTACTCAGAAGGGTTATTGACTACTTTGACTCAAGCACTACAGAATGCTGGCGTGGATCTGTCACAGGCTAATATATCTGTTCAGATTGATCTTGCAAAGAGAGCAAATGGATCGTCCACCTCTGGACTGGATCCTGAGAATACTCATTCCGGCAGCCAAGCAAGGGCCCACTCAAGGGATATAGGCAGTGGACAGGATTCAGATCATGCTACAAAGCGGCTGAAGACGTGA | 990 | 44.24 | MRTGKSNREDEEYEEDEFDSKKEGPSSASAANNSNNSNSKGDAKNNDKANALRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQGRVQKYEGSYQSWSGEPTKLIPWRNSHWHIQNFVGYPEAAKNGSAPGSTFPGKFDENNNTISPALLKGSKNLVESDPCRVTAEQAEIQNKGISPLSLPLQANIPVPNGMPAQPQHRSISDAQSSGGRPTTDTLNQQDEMTIEGGTISISSAYSEGLLTTLTQALQNAGVDLSQANISVQIDLAKRANGSSTSGLDPENTHSGSQARAHSRDIGSGQDSDHATKRLKT | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2483612 | 2487053 | + | Conep09aG0052900.1 | Cone9ag0519 | 444682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 46 | 64 | - | - | |
Cone9ag0519 | 329 | FunFam | BHLH domain class transcription factor | 49 | 121 | - | - | |
Cone9ag0519 | 329 | Gene3D | - | 49 | 121 | IPR036638 | GO:0046983(InterPro) | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 25 | 45 | - | - | |
Cone9ag0519 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 53 | 102 | IPR011598 | GO:0046983(InterPro) | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 214 | 238 | - | - | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 314 | 329 | - | - | |
Cone9ag0519 | 329 | SMART | finulus | 57 | 107 | IPR011598 | GO:0046983(InterPro) | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 289 | 313 | - | - | |
Cone9ag0519 | 329 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 5 | 329 | IPR044295 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro) | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Cone9ag0519 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 51 | 101 | IPR011598 | GO:0046983(InterPro) | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 204 | 238 | - | - | |
Cone9ag0519 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 49 | 122 | IPR036638 | GO:0046983(InterPro) | |
Cone9ag0519 | 329 | CDD | bHLH_AtBIM_like | 50 | 126 | - | - | |
Cone9ag0519 | 329 | MobiDBLite | consensus disorder prediction | 289 | 329 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone9ag0519 | Cone-Chr9:2483612 | Cone20ag0871 | Cone-Chr20:6328556 | 1.99E-06 | dispersed | |
Cone11ag0349 | Cone-Chr11:1712857 | Cone9ag0519 | Cone-Chr9:2483612 | 3.34E-52 | wgd | |
Cone13ag0021 | Cone-Chr13:129915 | Cone9ag0519 | Cone-Chr9:2483612 | 9.50E-57 | wgd | |
Cone18ag1151 | Cone-Chr18:8275206 | Cone9ag0519 | Cone-Chr9:2483612 | 8.49E-44 | wgd | |
Cone19ag0030 | Cone-Chr19:214741 | Cone9ag0519 | Cone-Chr9:2483612 | 2.55E-57 | wgd | |
Cone6ag0508 | Cone-Chr6:2524471 | Cone9ag0519 | Cone-Chr9:2483612 | 9.16E-192 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46801 | PF16134 | THOC2_N | 4.50E-51 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0519 | - | - | - | 0.0 |