Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0540 ATGGAGAAGGTGAAAATGCAATGGTGGAGTTTACTTGTACTACTCCTTGCTGTGGTAACCCTAGAAATGGCAATGTCTCATGGTCTTCATCCTCTGGCTCATATAGAGATCCACAAGACTGTTTTCGCGCTTGATTCCAGAGCTTACATCAAAGCCTCTCCTACTCTTCTCGGTCTCTCTGGACAAAACACACAGTATATTACAGTTGAGTACCATAGCCCAAATCCATCAATCGAGGATTTCATTGCAGTTTTTTCGCCTGCAAATTTCAGTGCTGCTTCCTGCCCGAAAGAAAATTCGATGGTTGTTGCTCCACTGCTGTGCACAGCACCTATTAAGTATCAGTATGCAAATTACTCGAATTCTAACTACAAAGCAACAGGGAAAGGTTTGCTGAAGCTTCAATTGATTAAGCAGAGATCTGACTTTTCCTTCGCATTATTCACTGGTGGTGTATCAAATCCCAAACTGGTGGCAGTTTCAAATACAGTCAGATTTGTGAACCCAAATGCTCCAGTTTATCCACGGTTAGCGCAAGGGAAATTGTGGAACGAAATGACTGTAACATGGACCAGCGGATACGGGATTGATGTAGCAGAGCCTTTTGTGGAATGGGGTCCAATAGGAGGAGTTAGGATGAGTTCTTCTGCTGGGACACTCACATTTGATCGCAACACCATGTGCGATGCACCAGCCAGGACAGTAGGGTGGCGTGATCCTGGCTATATACATACTGCCTTTCTGAAGGAATTGTGGCCCAACAGAAAGTATGCATACAAGCTTGGGCATAAATTAATTAACGGTACATACATCTGGAGTTCAGAATATATATTTAAATCATCTCCATATCCTGGTCAAAATTCTCTACAACGTGTAATCATATTTGGCGACATGGGAAAGGGTGAAGAAGATGGATCCTACGAGTATAATAACTATCAGCCTGGTGCTTTGAACACAACAAATCAGCTTGTACAAGACTTGGAGAACTTTGATATGGTCTTCCACAATGGCGATATTGTTTATGCTACCGGATATATATCACAGTGGGACCAATTTACTGCACAGATAGAACCAATTGCATCAACTAAACCATACATGATTTCAAGTGGTAACCATGAGAGAGACTGGCCAGGAACAGGATCCTTCTACCAGAACAAAGATTCAGGTGGAGAATGTGGTGTATTAGCCCAGACCATGTTTTACGTTCCTGCTGAGAACAGGGCTCAGTTCTGGTACACCTCTGATTACGGCATGTTCAGATTCTGCGTAGCACACACTGAACTTGATTGGAGAGAGGGCTCAGAGCAATACAAGTTCATTGAGAACTGCCTAGCCTCGGTTGACAGACAAAAGCAACCGTGGCTCATCTTTTTGGCTCACAGAGTGTTGGGCTATTCTTCTGCAGGGTTTTATGTGGCAGAGGGATCCTTTGAAGAACCAATGGGAAGGGAGAGCCTTCAGAAACTCTGGCAAAAATACAAGGTTGACATTGCCGTGTATGGCCACGTACACAATTATGAAAGAACATGTCCTATCTACGAGAATATCTGCACTAGCCAGGAGAAGAACAATTACCGGGGAAGCTTAAATGGGACAATACATGTGGTGGCCGGAGGTGGCGGATCGAGCCTTGCAACATTTGCTCCGGTGAACACAGCTTGGAGCATTTACAAAGACTATGATTATGGCTTCACTAAACTCACTGCATTCAACAATTCCCATCTGCTTTTCGAGTACAAAAAGAGCAGTAACGGAAAAGTTTACGACTCTTTCACTATAACCAGAGATTATAGGGATATCTTGGCTTCAACTATTGATAGTTCCTCACCTACAACTTTGGCCTTTTGA 1848 43.51 MEKVKMQWWSLLVLLLAVVTLEMAMSHGLHPLAHIEIHKTVFALDSRAYIKASPTLLGLSGQNTQYITVEYHSPNPSIEDFIAVFSPANFSAASCPKENSMVVAPLLCTAPIKYQYANYSNSNYKATGKGLLKLQLIKQRSDFSFALFTGGVSNPKLVAVSNTVRFVNPNAPVYPRLAQGKLWNEMTVTWTSGYGIDVAEPFVEWGPIGGVRMSSSAGTLTFDRNTMCDAPARTVGWRDPGYIHTAFLKELWPNRKYAYKLGHKLINGTYIWSSEYIFKSSPYPGQNSLQRVIIFGDMGKGEEDGSYEYNNYQPGALNTTNQLVQDLENFDMVFHNGDIVYATGYISQWDQFTAQIEPIASTKPYMISSGNHERDWPGTGSFYQNKDSGGECGVLAQTMFYVPAENRAQFWYTSDYGMFRFCVAHTELDWREGSEQYKFIENCLASVDRQKQPWLIFLAHRVLGYSSAGFYVAEGSFEEPMGRESLQKLWQKYKVDIAVYGHVHNYERTCPIYENICTSQEKNNYRGSLNGTIHVVAGGGGSSLATFAPVNTAWSIYKDYDYGFTKLTAFNNSHLLFEYKKSSNGKVYDSFTITRDYRDILASTIDSSSPTTLAF 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2580053 2584917 - Conep09aG0055000.1 Cone9ag0540 444703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0540 615 CDD MPP_PAPs 290 595 IPR041792 -
Cone9ag0540 615 Pfam Calcineurin-like phosphoesterase 291 506 IPR004843 GO:0016787(InterPro)
Cone9ag0540 615 Pfam Iron/zinc purple acid phosphatase-like protein C 531 590 IPR025733 -
Cone9ag0540 615 SUPERFAMILY Purple acid phosphatase, N-terminal domain 150 282 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone9ag0540 615 Gene3D - 171 284 - -
Cone9ag0540 615 Pfam Fn3-like domain from Purple Acid Phosphatase 50 168 IPR040974 -
Cone9ag0540 615 SUPERFAMILY Metallo-dependent phosphatases 290 597 IPR029052 -
Cone9ag0540 615 PANTHER PURPLE ACID PHOSPHATASE-RELATED 29 598 - -
Cone9ag0540 615 Pfam Purple acid Phosphatase, N-terminal domain 176 279 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone9ag0540 615 Gene3D - 286 599 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0540 K22390 - - gmx:100817130 982.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1034 Cone-Chr3:29133309 Cone9ag0540 Cone-Chr9:2580053 1.39E-97 dispersed
Cone6ag0528 Cone-Chr6:2623351 Cone9ag0540 Cone-Chr9:2580053 0 dispersed
Cone9ag0540 Cone-Chr9:2580053 Cone9ag0553 Cone-Chr9:2629585 2.97E-07 dispersed
Cone9ag0538 Cone-Chr9:2573539 Cone9ag0540 Cone-Chr9:2580053 0 proximal
Cone9ag0540 Cone-Chr9:2580053 Cone9ag0541 Cone-Chr9:2586007 6.86E-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g38 Blo01g00453 . Bda01g02128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0528 Cone9ag0540 . . . . . . . . . Bpe02g02315 Bma01g00122 . . . . . . . . . Cpe07g00088 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007198 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 4 1 37