Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0542 ATGTGGAGAAGAGCTCTGAGATTGATCCAACGCAATTCCTTCTCTTCTGCCCCTGAAATTCCAGTCCTTTACTCCTTCCTTCAACCCTCTGTCTTTGCCCTCAACAAAACCCCGTCCTCTCTGGACCCCACCAAATCCCCAATTGGTACAACCTCACAAACCCTAACGCTAGATCACATCTCCCATCTCGAAACCACTCTTCACAAATCCCTCATCACCAGCAACACCGACGAAGCTTGGAAATCCTTCAAGACACTCACGAGCAGCTCTCATTTCCCGAGTAAGCCCCTGATCAATTCTCTAATCACTCACTTGTCGTCTCTCAATGAGGTTCATAATTTGAAGAGGGCTTTTGCTTCTACGGTTTTTGTTATCGAGAAGAATCCGGAGTTGTTGGATTTTCAAACTGTTGAGACTCTGTTGGATTCTATGAAATCTGCTAACACTGCTGCCCCTGCTATCGCTCTGATCAAATGCATGTTCAAGAATAGGTATTTTGTGCCTTTTAGTGTCTGGGGTCATTTACTTGTCGAAATTTGTAGGAAGACTGGTAGTTTCACTCCGTTTTTGCGGGTTTTCGAGGAGACTTGTAGGATTGCTTTAGATGAGAAGATGGATTTCATGAAACCAGATTTGATTGCTTGCAATACAGCATTGGAAGGTTGCTGTTTCGAGCTTGAATCCGTTAGTAATGCTGAGAAGGTTATTGAAACCATGTCTGTTTTGAATGTTCGGCCCGATGAATCAAGTTTCGCTGCTCTTGGGTTCTTATATGCATTGAAGGGGCTTGAACAAAAGATAGTTGAGTTAGAAGGTTTTATGAATGAATTTGGGTTCTCAGATAAAAGGGTGTATATGAGTAAGTTGATCAGTGGGTATGTTAAGTCGGGTAATTTGGAGTCAGTCTCGGCTACAATTCTGAGGAGTTTAAGAGAAGGAAATGAGCAGACTTCAAATTTTTGTGAAGAGACTTATTGCGAATTGGTCAAGGGGCTTACTCAAAGTGGAAATATAAAGGGTTTGGCAGCCTTGATAGTTGAAGCTCAGAAGTTAGAACCTGCTGAACTTCAGGTTGATAAATCTATAGGATATGGCACTATTAATGCCTGTGTCAATATGGGTTTATCAGATAAAGCACATAGTATTCTTGATGAAATGAATGCTCAGGGAGATTCTCCAGGTCTTGGGGTATATGTCCCGATCTTAAAGGGTTACTGCAAAGATCATAGAACGGCTGAGGCTACTCAACTAGTTATGGATATAAGCAATTCCGGGCTTGTTCTAGACGTAGGAAGCTATAATAATTTAATAGATGCATCAATGTCAAGCCAAGATTTTCAATCGGCTTTTTCGCTGTTTAGGGACATGAGAGAAGCGAGAGTATCGGAATTGAAAGGAAGTTACTTAACGATCATGACGGGCTTGATGGAGAATCATCGGCCCGAGTTGATGGCATCCTTTTTGGACGAGGTTGTAGAGGACCCAAAAATTGAAATAACTACCCATGATTGGAATTCAATCATTCATGCCTTTTGTAAGTCTGGCCGATTAGAAGATGCAAAGAGGACTTTTAGAAGGATGATATTCTTACGTTTTGAACCTAATGATCAGACCTATTTGTCTTTGATTAATGGGTATGTTTCTATGGAGAGATACTTCAATGTTTTGATGTTGTGGAATGAGGTTAAGAGGAAGATCTCTACTACTGGTGGGAAAGGCATTAAATTTGATCATAATCTTGTTGATGCGTTTTTATATGCTATGGTTAAAGGAGGTTTCTTCGATGCTGTGATGCAAGTTGTTGAGAAAAGTCAGGAGTTGAAGATTTTTGTGGATAAATGGAGGTACAAGCAAGCTTTCATGGAGGCCCATAAGAAGCTTAGAGTGTCGAAGTTAAGGAAGAGGAACTTGAGGAAGATGGAAGCACTTGTCGCTTTTAAAAATTGGGCTGGGCTGAGTGCGTAA 1965 41.17 MWRRALRLIQRNSFSSAPEIPVLYSFLQPSVFALNKTPSSLDPTKSPIGTTSQTLTLDHISHLETTLHKSLITSNTDEAWKSFKTLTSSSHFPSKPLINSLITHLSSLNEVHNLKRAFASTVFVIEKNPELLDFQTVETLLDSMKSANTAAPAIALIKCMFKNRYFVPFSVWGHLLVEICRKTGSFTPFLRVFEETCRIALDEKMDFMKPDLIACNTALEGCCFELESVSNAEKVIETMSVLNVRPDESSFAALGFLYALKGLEQKIVELEGFMNEFGFSDKRVYMSKLISGYVKSGNLESVSATILRSLREGNEQTSNFCEETYCELVKGLTQSGNIKGLAALIVEAQKLEPAELQVDKSIGYGTINACVNMGLSDKAHSILDEMNAQGDSPGLGVYVPILKGYCKDHRTAEATQLVMDISNSGLVLDVGSYNNLIDASMSSQDFQSAFSLFRDMREARVSELKGSYLTIMTGLMENHRPELMASFLDEVVEDPKIEITTHDWNSIIHAFCKSGRLEDAKRTFRRMIFLRFEPNDQTYLSLINGYVSMERYFNVLMLWNEVKRKISTTGGKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKSQELKIFVDKWRYKQAFMEAHKKLRVSKLRKRNLRKMEALVAFKNWAGLSA 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2589165 2591357 - Conep09aG0055200.1 Cone9ag0542 444705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0542 654 NCBIfam pentatricopeptide repeat 504 535 IPR002885 -
Cone9ag0542 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Cone9ag0542 654 Gene3D Tetratricopeptide repeat domain 349 461 IPR011990 GO:0005515(InterPro)
Cone9ag0542 654 Pfam PPR repeat 367 389 IPR002885 -
Cone9ag0542 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Cone9ag0542 654 Gene3D Tetratricopeptide repeat domain 162 317 IPR011990 GO:0005515(InterPro)
Cone9ag0542 654 Gene3D Tetratricopeptide repeat domain 462 626 IPR011990 GO:0005515(InterPro)
Cone9ag0542 654 Pfam PPR repeat family 504 547 IPR002885 -
Cone9ag0542 654 PANTHER BNAC05G43320D PROTEIN 11 653 - -
Cone9ag0542 654 Pfam Pentatricopeptide repeat domain 417 461 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0542 Cone-Chr9:2589165 Cone18ag0637 Cone-Chr18:3314589 1.70E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0542 - - - 0.0