Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0551 ATGAATGAAGAAGATAAGACCGATCCTGCAACCGAGTTCAACAGCCGCGCGAGCTGGATGCAGTTCGGAGCTGGCTACGATAGTGTTTACAGCTTCTTCTCCGGCGGCGATAGTGAGAGCAGTACACTAGGTGAGTTCGGATGGAACTTTGCAACGGACGATATGGACCAAGCCGGAAGCCAACATGGGCGGATCTCCGACTTAGACCGAATCGGTACTGGCGATAGGTTCAATTTGGCGGGAAATGTTGAGGTGCCGCCAGAGAAAAGTAGTAGCAGAGAGGTTGGGGGATCGGAACCGAGGATTTTGGTAGGATCGGTTAGTAAAGTTTCCACGTCCAATCCGTCGCTGTCTTCATGCTCGAGCGAAGATCCGCCTGAAAAGTCCACCGGATCCGGCGGGAAACCGCCTGAGATATCGAGTAGCAGTAGTAAGGTGGTCCAAAAGAAGGCCGTGAAAATGCAATTCCTGCAACCCCGGGTTGCATTCGTGACAAAGAGCCAAGTTGATAATCTTGAAGACGGCTACAGATGGAGAAAATATGGACAGAAGGCTGTCAAAAACAGTCCCTTCCCAAGGAGTTACTATCGCTGCACAAACAGTAAATGCACGGTGAAGAAAAGAGTAGAAAGATCATGGGAGGATCCAAGTATTGTAATAACAACATATGAAGGTCAACACTGCCATCAAACTGTAGGATTTTCCCGAGGTGGGGGATTCATTAGTACTACTCATGATCATGATCAATCAGCTCCCTTTGATCATGGGGGCCGTGGTCGATTATTACTGGCTTCTAATTCCGAACATCTCGATCGGATTAATAACCCGCGGTTTCGCTACCACTCTACCGTACTTCATCGTGGCGATCAGCTTATCACTATAACATCACATGAGTCAAAGTCGCAAACTAGCACTCCTTCAGGTGAAGGATTGCTTGCAGACATTGTCCCTCCTGGAATGCTTAACAGACCATGA 975 48.51 MNEEDKTDPATEFNSRASWMQFGAGYDSVYSFFSGGDSESSTLGEFGWNFATDDMDQAGSQHGRISDLDRIGTGDRFNLAGNVEVPPEKSSSREVGGSEPRILVGSVSKVSTSNPSLSSCSSEDPPEKSTGSGGKPPEISSSSSKVVQKKAVKMQFLQPRVAFVTKSQVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSWEDPSIVITTYEGQHCHQTVGFSRGGGFISTTHDHDQSAPFDHGGRGRLLLASNSEHLDRINNPRFRYHSTVLHRGDQLITITSHESKSQTSTPSGEGLLADIVPPGMLNRP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2624393 2626734 - Conep09aG0056100.1 Cone9ag0551 444714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0551 324 Pfam WRKY DNA -binding domain 173 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0551 324 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0551 324 SUPERFAMILY WRKY DNA-binding domain 165 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0551 324 MobiDBLite consensus disorder prediction 105 145 - -
Cone9ag0551 324 MobiDBLite consensus disorder prediction 297 324 - -
Cone9ag0551 324 SMART WRKY_cls 172 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0551 324 MobiDBLite consensus disorder prediction 79 145 - -
Cone9ag0551 324 Gene3D WRKY domain 159 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0551 324 FunFam WRKY transcription factor 57 158 232 - -
Cone9ag0551 324 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 114 242 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0908 Cone-Chr6:4663736 Cone9ag0551 Cone-Chr9:2624393 2.08E-33 dispersed
Cone7ag0093 Cone-Chr7:409523 Cone9ag0551 Cone-Chr9:2624393 1.52E-30 dispersed
Cone9ag0551 Cone-Chr9:2624393 Cone9ag1265 Cone-Chr9:9395529 2.89E-27 dispersed
Cone13ag0914 Cone-Chr13:8023565 Cone9ag0551 Cone-Chr9:2624393 3.96E-62 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone9ag0551 Cone-Chr9:2624393 1.78E-60 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone9ag0551 Cone-Chr9:2624393 8.56E-25 wgd
Cone4ag0520 Cone-Chr4:2323337 Cone9ag0551 Cone-Chr9:2624393 7.95E-26 wgd
Cone6ag0541 Cone-Chr6:2670377 Cone9ag0551 Cone-Chr9:2624393 4.03E-172 wgd
Cone7ag0493 Cone-Chr7:2269946 Cone9ag0551 Cone-Chr9:2624393 6.93E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46803 PF02631 RecX 1.70E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0551 - - - 0.0