Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0556 ATGGATATGGAGATCGATTCAACGCAAGAACAGCACCGAATCAAGGACGATGTTCTATTCAAAGCGGCGGAGACTGGTAACTCTTCCATTTTCCGAGCTCTCACGCAAGAGCAGCTATTCAAATTTCTCTCTCTGAGAAATGAAGACGGCCGGTCTCTACTTCACGTCGCCGCCTCTTCCGGCCACACCGAGATAGTGAAGGTGTTTGCAGCTGTTGATGAAGCAGAAGGTGTTGTAAACAGTGCTGATGAAGAAGGTTGGGCGCCGATTCATTCTGCTGCTAGCATTGGAAACTTAGACTGTGTGGAAATTTTGTTAAGCAGAGGAGCTGATGTGAATTTGAAGAACAATGGAGGTCGTACTGCTCTTCACTATGCTGCTAGTAAAGGATGGTCGAAGATTGCTGAAACTTTGATTTCACATGGCGCCAAAATCAATCTGAAGGACAAGGTTGGATGCACTCCATTGCATAGGGCGGCTAGCACAGGGAACTCAGAATTGTGTGAGCTTTTAATCGAAGAAGGAGCAGATGTTGATGCGGTCGATAAAGCTGGCCAAACTCCTCTTATGAATTCTGTAGTTTGCCTTGACAAAGATGTAGCTCTCCTTCTAGTAAGGCATGGAGCTGATGTGGATGTGGAGGACAAGGAAGGATATACCGTGCTCGGTCGAGCTTCACAGGATCTTAGGCTAGCATTAGTTGATGCTGCTAAGGCTATGCTGGAAGGGTGA 732 46.86 MDMEIDSTQEQHRIKDDVLFKAAETGNSSIFRALTQEQLFKFLSLRNEDGRSLLHVAASSGHTEIVKVFAAVDEAEGVVNSADEEGWAPIHSAASIGNLDCVEILLSRGADVNLKNNGGRTALHYAASKGWSKIAETLISHGAKINLKDKVGCTPLHRAASTGNSELCELLIEEGADVDAVDKAGQTPLMNSVVCLDKDVALLLVRHGADVDVEDKEGYTVLGRASQDLRLALVDAAKAMLEG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2637863 2639913 + Conep09aG0056600.1 Cone9ag0556 444719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat profile. 49 69 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 Gene3D - 72 122 IPR036770 -
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Cone9ag0556 243 SMART ANK_2a 85 114 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 SMART ANK_2a 49 81 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 SMART ANK_2a 151 180 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 SMART ANK_2a 184 213 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 SMART ANK_2a 118 147 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 Gene3D - 123 242 IPR036770 -
Cone9ag0556 243 Gene3D - 2 71 IPR036770 -
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Cone9ag0556 243 Pfam Ankyrin repeats (3 copies) 15 70 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 Pfam Ankyrin repeats (3 copies) 97 182 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Cone9ag0556 243 SUPERFAMILY Ankyrin repeat 17 227 IPR036770 -
Cone9ag0556 243 ProSiteProfiles Ankyrin repeat region circular profile. 49 69 - -
Cone9ag0556 243 PRINTS Ankyrin repeat signature 50 65 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 PRINTS Ankyrin repeat signature 101 115 IPR002110 GO:0005515(InterPro)
Cone9ag0556 243 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 19 116 - GO:0030941(PANTHER)|GO:0031359(PANTHER)|GO:0045036(PANTHER)
Cone9ag0556 243 Pfam Ankyrin repeat 185 216 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0546 Cone-Chr6:2690099 Cone9ag0556 Cone-Chr9:2637863 7.19E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0556 K06694 - csv:101208718 369.007