Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0558 ATGTACAGGAGAGTTTCCACAGCCGAAGCAACAGCCACAACCACTACGACGACCCAAGGAGGATCACCAATTGATAATGTGGATTATATTATTGTTAGTTTGAATCAAGTTCCAAGGTGGAGTGATGCAGAATATAGGTCTTCCTTGGAATTTGAGAGTGAAGATCCGTCCTTTTCTAATTCATACTTTCACGATCCTTTAACCTCTTTGTCTGGGTCAGAGGGTGGCATTAATGGAGTTGTTTCAAGGTTTCCCGTTGATCAGGAAATTAATTCTAAGATATATCTATGGAGAGGAAACCCGTGGAATCTTGAAGTGGATGCTGTAGTGAATTCTACTAATGAGAACCTGGATGAAGCACACAGTAGCCCTGGACTACATGCTGCAGCTGGTCCTTATCTTGCAGAAGAATGTGCATCATTGGGTGGCTGCCGCACCGGGATGGCAAAAGTAACTAATGCATATGACCTTCCTGCTAGGAGGGTTATACATACTGTTGGTCCAAAGTATGCAATTAAATATCATACTGCTGCAGAGAACGCTCTAAGTCATTGTTATCGTTCTTGCCTTGAGCTTCTGATTGAAAATGGGCTTCAAAGCATTGCAATGGGATGCATCTATACTGAGGCTAAAAACTATCCTCGTGAACCTGCTGCACATGTGGCTATAAGGACTGTCCGGAGGTTTCTTGAGAAGCAAAAGGATAAGATCAAAGCTGTTGTATTTTGTACCACCACATCATCAGATACTGAGATATATAAAAGATTGCTTCCACTTTACTTTCCCCGTGATAAACATGAGGAGCAAGTTGCCATGTTGAAGCTTCCTGCAGATGTTGGGGATGAGAATGGTGAGACTATTATAGATGAACGTAAAATCAGGATAAAGCCTTTGCCCAAAAAGAATATTCCAAAACCACCTCAAACTCCAGATGATCCTCCAATCAGTGATGTTGGGTTAACACGGAGGACTTCTACATATTTGGATACATATTTGGATCCTGCCTTCATGTCCTTAATCAAAGATCCTGATCAGAGACGCAAGGAACAGTGGGAAAAAACTGCACAAGCAAAGAGTGGATGGAATTGTGCTAAAATGCTTGGATTTGGTGACCTTGGTGGACCTCCGTTGTCTGTTGCTGAAGAATACTCACTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTCAGTCTCTCTGAAATAGCAGAGATGAAAATTGTTTCCCGGGGTGGTGTTGACAGCGAAGGTCGTCCTGTAATGGTGGTTGTGGGGGCACATTTTCTGCTAAGGTGTCTTGATCTTGAGCGCTTTGTGCTCTATGTAGTGAAGGAATTTGAGCCGCTGATACAGAAACCTTATACAATTGTGTACTTCCACTCAGCAGCATCTTTACAGCCTCGACCGGACCTGGGTTGGATAAGAAGATTACAACAAATTATTGGCCGGAAACACCAGCGTAACCTTCATGCAATATACATTCTTCACCCTTCATTCGGACTTAAAGCTGCCATATTGGCTCTGCAACTGTTAGTAGACAATGTGGTGTGGAATAAAGTCGTATACATAGATCGTCTTCTTCAGCTGTTCAGATACGTTCCCCGTGAGCAGTTAACCATCCCCGACTTTGTATTTCAGCACGATTTAGAAGTGAATGGAGGGAAGGGTCTTATAGTTGACCCACGAACAAGATACGTGTATAATCGGCCTTGA 1710 42.87 MYRRVSTAEATATTTTTTQGGSPIDNVDYIIVSLNQVPRWSDAEYRSSLEFESEDPSFSNSYFHDPLTSLSGSEGGINGVVSRFPVDQEINSKIYLWRGNPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPYLAEECASLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAIKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKIKAVVFCTTTSSDTEIYKRLLPLYFPRDKHEEQVAMLKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPQTPDDPPISDVGLTRRTSTYLDTYLDPAFMSLIKDPDQRRKEQWEKTAQAKSGWNCAKMLGFGDLGGPPLSVAEEYSLHSRYLAKANSLSLSEIAEMKIVSRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYTIVYFHSAASLQPRPDLGWIRRLQQIIGRKHQRNLHAIYILHPSFGLKAAILALQLLVDNVVWNKVVYIDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTRYVYNRP 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2642495 2647971 + Conep09aG0056800.1 Cone9ag0558 444721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0558 569 ProSiteProfiles Macro domain profile. 81 261 IPR002589 -
Cone9ag0558 569 CDD SEC14 404 540 IPR001251 -
Cone9ag0558 569 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 394 543 IPR001251 -
Cone9ag0558 569 SMART YBR022w_8 93 222 IPR002589 -
Cone9ag0558 569 SUPERFAMILY CRAL/TRIO domain 399 537 IPR036865 -
Cone9ag0558 569 Pfam Divergent CRAL/TRIO domain 416 547 IPR001251 -
Cone9ag0558 569 Gene3D - 399 550 IPR036865 -
Cone9ag0558 569 SMART sec14_4 400 546 IPR001251 -
Cone9ag0558 569 Gene3D Leucine Aminopeptidase, subunit E, domain 1 24 266 IPR043472 -
Cone9ag0558 569 MobiDBLite consensus disorder prediction 1 22 - -
Cone9ag0558 569 CDD Macro_GDAP2-like 92 260 IPR035793 -
Cone9ag0558 569 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 32 295 - -
Cone9ag0558 569 MobiDBLite consensus disorder prediction 7 22 - -
Cone9ag0558 569 SUPERFAMILY Macro domain-like 83 290 IPR043472 -
Cone9ag0558 569 Pfam Macro domain 110 222 IPR002589 -
Cone9ag0558 569 MobiDBLite consensus disorder prediction 298 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0558 K24997 - - cit:102618722 987.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0547 Cone-Chr6:2693370 Cone9ag0558 Cone-Chr9:2642495 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46