Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0566 ATGATATGCATCATTTTTCCCCAGATTACATGTGTCTTTGGCCTGTATATCCGGTGTGCCGGAGCTGATCCTGCAGATCCTGGAGTTTTCAAGTCAAAGAAATATCTCCATATTCCGGACAAATCAAAGTCTTTTCAACAGAAAGATTTTAAACATGGTGGCCAGTCGACTTCATCAACACACAATGCTGCTTCTGCTGCTAACTCTGAGGCTAAAACTCCACTCGATAAGGATGTTATAGGCACAAATCCAACCTCTAAAGACCTTTCAGAAACCGAGAAGAACAATCACTCATCGTCCAAGAGTTCTTCTTCTCTCCTGTTTGCGTGTTCCCCCTGTGCTTTTATCTGCAAATGTTCCAGTTCGACCGAAGAATCTTCTGACCAGCAGATGAGTGAAGAAGGAATGTTTTATTGTAGTTCGTGTGAAGTTGAGGTTTTTAAGTATAGCAAGCACTGTAGGGTTTGTGACAAATGTGTGGACCGATTTGATCATCACTGCAGGTGGCTTAACAACTGCATCGGAAGAAAGAACTATAGACAGTATTTTACCCTCATGGTTGCTTCTCTCCTCTTGAGGAAGCATTTTTCTGTTGATATCTCCTCAAAGTTAGGTAGCAGCTTCTCATTGGTCCCCTTCGTTATTGTAGCGGCAATGTGTACCATTTTGGCCATGTTTCCAACCCTTCCACTTGCTCAACTCTTCTTTTTTCACATCCTCCTTATAAAGAAGGGTATTAGTACATATGATGTAATCATAGCTTTATGGGTGCAAGAGCAAGAGCAACAAGGACTTGGAGGAGGTCAACAAAGTCCTCAAATCTCCGTTATGAGGTCATTGACTGGACTAAGCAGTGCTAGCTTCTACAATACTTTCCAGCGTGCTGCTTGGTGTACACCTCCACGCTTGTTTCTAGAAGATCAGTTTGACATTGTCCCCCCAGAAACTGGATCGGTTAATTCGTTAGGAAAGATGGTTGGACTGGAAACGGCAAAGAAACGGAATGCTCCAGCAGAAAAGATCAGCCCGTGGACACTAGCTCGGTTAAATGCAGAAGAGGTTTCAAAGGCTGCCACAGAGGCCCGAAAAAAGTCCAAAATTCTTCAGCCTTTGGTTAGACCGGATCCCACTTTCAGGCGCGAAACAGATAGTGGTGTTGACAGCGGTGGCCGTCAAATGGGCCCCAGGCCTGATAATAACAGAAGGCGAGCAACTAAGCGGGTCCGCCTTCCAGCCGACTTATCATTAGATTCCTTGTCAGAGAGCCCAGCAAAGCCCCTTGAGAAAGGTTTAACTGGCTCATCATCAATTAGTCTTCTTCCACTTCAGCTCGAAGCAAGGAGTGCTTTCCAAACAAGCAGAACAATGGCTGCTTCTTCTCCCGAGAGTAGTTTAGACTCGCCTGATATTCACCCTTTCCGGGTCTCCTCGTCCAGGGTTGAGGAATCTAGGCGGCTCAGTGGTCAAAATGCTGATGACATGGCATCTCAGAAGGGAATATTCGCTCTGTTTTCGAGGTCAACTAGTGATGGTTATGAAGCATCGGGTGGAGAAGACAGTGATCGGGTTTCTTTTCGGATTGGGCAGAATGAAAGGATTGTGAAACTAAAACCAGCTTCTTCTTCTTCTGGATGGCTTGACCAATTTTGA 1650 45.15 MICIIFPQITCVFGLYIRCAGADPADPGVFKSKKYLHIPDKSKSFQQKDFKHGGQSTSSTHNAASAANSEAKTPLDKDVIGTNPTSKDLSETEKNNHSSSKSSSSLLFACSPCAFICKCSSSTEESSDQQMSEEGMFYCSSCEVEVFKYSKHCRVCDKCVDRFDHHCRWLNNCIGRKNYRQYFTLMVASLLLRKHFSVDISSKLGSSFSLVPFVIVAAMCTILAMFPTLPLAQLFFFHILLIKKGISTYDVIIALWVQEQEQQGLGGGQQSPQISVMRSLTGLSSASFYNTFQRAAWCTPPRLFLEDQFDIVPPETGSVNSLGKMVGLETAKKRNAPAEKISPWTLARLNAEEVSKAATEARKKSKILQPLVRPDPTFRRETDSGVDSGGRQMGPRPDNNRRRATKRVRLPADLSLDSLSESPAKPLEKGLTGSSSISLLPLQLEARSAFQTSRTMAASSPESSLDSPDIHPFRVSSSRVEESRRLSGQNADDMASQKGIFALFSRSTSDGYEASGGEDSDRVSFRIGQNERIVKLKPASSSSGWLDQF 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2677404 2679942 + Conep09aG0057600.1 Cone9ag0566 444729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0566 549 MobiDBLite consensus disorder prediction 451 466 - -
Cone9ag0566 549 MobiDBLite consensus disorder prediction 451 492 - -
Cone9ag0566 549 MobiDBLite consensus disorder prediction 359 433 - -
Cone9ag0566 549 MobiDBLite consensus disorder prediction 49 69 - -
Cone9ag0566 549 MobiDBLite consensus disorder prediction 46 104 - -
Cone9ag0566 549 Pfam DHHC palmitoyltransferase 138 251 IPR001594 GO:0016409(InterPro)
Cone9ag0566 549 ProSiteProfiles DHHC domain profile. 137 187 - -
Cone9ag0566 549 MobiDBLite consensus disorder prediction 396 410 - -
Cone9ag0566 549 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 11 354 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0566 K20027 - - csv:105434394 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0009 Cone-Chr20:82689 Cone9ag0566 Cone-Chr9:2677404 2.84E-39 dispersed
Cone13ag0930 Cone-Chr13:8072561 Cone9ag0566 Cone-Chr9:2677404 5.40E-155 wgd
Cone19ag0923 Cone-Chr19:7124008 Cone9ag0566 Cone-Chr9:2677404 2.18E-157 wgd
Cone6ag0559 Cone-Chr6:2748622 Cone9ag0566 Cone-Chr9:2677404 6.25E-273 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005335 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 1 40