Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0580 ATGGCTGGCCATAGAAATGACTATGGCAAGAGATCCAATTTCCAGTTGGATAGTCCTGGAAGTGGAGGAAGTAAAAGAAGAAATCCAGGAGAAGACTCGAACCAGAACACGATGAGTTCAGAAGACACAGTGTACCGTTATTTGTGTCCTGCCAGAAGAATTGGAAGCATTATCGGGAAAGGCGGTGAGATAGTAAAACAGTTAAGGTCCGAAACTAAATCAAACATTAGAATTGGAGAGACCCTTATGGGATGTGAAGAGCGTGTAGTCACTATATACAGTAATTCTGAGGAAACTAATATCTTTGAAGAGACGGGCGAGTTTATTTCGCCTGCACAAGATGCTTTGTTTAGGGTGCATGATAGGATTGTTGCTGAGGAGCAGATTCAAGCTGATGGAGAGGAATCTGAAGAGGTGCAAGAAGTTGTTGTTAGAATGCTTGTGCCCCCAGATCAGATTGGATGTGTTATTGGGAAAGGTGGACAGGTGATTCAGAATATTCGTAATGAAACTCATGCTCAAGTTCGGGTTATAAGAGATGAGTATATGCCTCTTTGTGCTTTGAGGTCTGATGAGCTTCTCCTGATTGTAGGGGAGCCCTCGGCTGTGAGAAATGCTCTTCATTTATTGGCATCTCGTCTTCATGAAAACCCATCTCGTTCTCAGCATTTGCTCCTCACTTCTTCATCCAACATGTATCAATCTGGTGGGCTTTTCATGAATCCAAATGCCGCTGCATCAGCTATAGGTCTACATTCAGATTACTGGTCCTCTCAAAGGGATGAAGCTTCTGCAAAGGAATTTTCTCTTCGTTTAGTCTGCCCATCTGAAAATGTTGGAGCTGTGATCGGAAAAGGTGGTGTTGTTATCAAGCAAATCAGACAAGAATCAGGAGCCTCGATTAAAGTTGACAGCTCTGCCTCTGAAGGAGATGACTGCATCATATTTGTATCGGCCAAGGAGTTCTTTGAAGATCCATCTCCAACCATCAATGCAGCACTGCTTTTACAACAGAGGTGCAGTTTAAAAGTTGAGAGAGAATCAGGTGGTGATCTAATCACAACCCGTCTCCTCGTTCCAAGCTCGCGTACTGGATGCCTCATTGGGAAGGGGGGCTTTATAATTTCCGAAATGAGGAATGCTACAAGGGCAAAGATCCTCATTCTGTCCAAGGATAATCTTCCCAGTATCGCATCGGAGGACGAGGATATGGTTCAGATCACGGGAGGACTTGATGCTGCAAGCAGTGCACTTCTACGAATTACTTCAACTTTAAGAGCCAATTACTTTGACAGAGATGGAAGCTTCTACAAAGGCATGACTGATGGCCCGAGATATGGAAACCGAGATAGTCCAGGTCATGGACAGAGACACTCGTCCCACTCAGGTAGACATGGCTCAAGTGAATTGAGTTATGGCCTTTCTGAGAGTGGTGGTAGAAATGTTTGA 1449 44.31 MAGHRNDYGKRSNFQLDSPGSGGSKRRNPGEDSNQNTMSSEDTVYRYLCPARRIGSIIGKGGEIVKQLRSETKSNIRIGETLMGCEERVVTIYSNSEETNIFEETGEFISPAQDALFRVHDRIVAEEQIQADGEESEEVQEVVVRMLVPPDQIGCVIGKGGQVIQNIRNETHAQVRVIRDEYMPLCALRSDELLLIVGEPSAVRNALHLLASRLHENPSRSQHLLLTSSSNMYQSGGLFMNPNAAASAIGLHSDYWSSQRDEASAKEFSLRLVCPSENVGAVIGKGGVVIKQIRQESGASIKVDSSASEGDDCIIFVSAKEFFEDPSPTINAALLLQQRCSLKVERESGGDLITTRLLVPSSRTGCLIGKGGFIISEMRNATRAKILILSKDNLPSIASEDEDMVQITGGLDAASSALLRITSTLRANYFDRDGSFYKGMTDGPRYGNRDSPGHGQRHSSHSGRHGSSELSYGLSESGGRNV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2728904 2732683 - Conep09aG0059000.1 Cone9ag0580 444743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0580 482 CDD KH-I_PEPPER_rpt1_like 267 334 - -
Cone9ag0580 482 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 134 218 IPR036612 GO:0003723(InterPro)
Cone9ag0580 482 MobiDBLite consensus disorder prediction 12 41 - -
Cone9ag0580 482 ProSiteProfiles Type-1 KH domain profile. 267 336 - -
Cone9ag0580 482 Pfam KH domain 144 210 IPR004088 GO:0003723(InterPro)
Cone9ag0580 482 Pfam KH domain 270 319 IPR004088 GO:0003723(InterPro)
Cone9ag0580 482 Pfam KH domain 45 97 IPR004088 GO:0003723(InterPro)
Cone9ag0580 482 Pfam KH domain 354 421 IPR004088 GO:0003723(InterPro)
Cone9ag0580 482 CDD KH-I_PEPPER_rpt1_like 42 117 - -
Cone9ag0580 482 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 348 427 IPR036612 GO:0003723(InterPro)
Cone9ag0580 482 CDD KH-I_PEPPER_rpt2_like 354 426 - -
Cone9ag0580 482 SMART kh_6 266 338 IPR004087 GO:0003676(InterPro)
Cone9ag0580 482 SMART kh_6 351 426 IPR004087 GO:0003676(InterPro)
Cone9ag0580 482 SMART kh_6 140 215 IPR004087 GO:0003676(InterPro)
Cone9ag0580 482 SMART kh_6 41 113 IPR004087 GO:0003676(InterPro)
Cone9ag0580 482 MobiDBLite consensus disorder prediction 1 41 - -
Cone9ag0580 482 MobiDBLite consensus disorder prediction 465 482 - -
Cone9ag0580 482 FunFam KH domain-containing protein 42 220 - -
Cone9ag0580 482 ProSiteProfiles Type-1 KH domain profile. 42 109 - -
Cone9ag0580 482 CDD KH-I_PEPPER_rpt2_like 145 214 - -
Cone9ag0580 482 ProSiteProfiles Type-1 KH domain profile. 141 210 - -
Cone9ag0580 482 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 265 319 IPR036612 GO:0003723(InterPro)
Cone9ag0580 482 Gene3D - 267 430 - -
Cone9ag0580 482 Gene3D - 41 222 - -
Cone9ag0580 482 MobiDBLite consensus disorder prediction 440 482 - -
Cone9ag0580 482 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 98 IPR036612 GO:0003723(InterPro)
Cone9ag0580 482 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 26 432 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cone9ag0580 482 ProSiteProfiles Type-1 KH domain profile. 352 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0580 K21444 - - vvi:100265365 624.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0320 Cone-Chr6:1498560 Cone9ag0580 Cone-Chr9:2728904 2.67E-54 dispersed
Cone8ag1030 Cone-Chr8:9536163 Cone9ag0580 Cone-Chr9:2728904 7.50E-54 dispersed
Cone9ag0354 Cone-Chr9:1559814 Cone9ag0580 Cone-Chr9:2728904 7.87E-42 dispersed
Cone16ag0842 Cone-Chr16:9030167 Cone9ag0580 Cone-Chr9:2728904 3.95E-186 wgd
Cone2ag0199 Cone-Chr2:1047414 Cone9ag0580 Cone-Chr9:2728904 3.41E-176 wgd
Cone6ag0574 Cone-Chr6:2803769 Cone9ag0580 Cone-Chr9:2728904 7.99e-311 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3