Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0581 | ATGGCTTTCGTTGCTCTGCTACTGGTGGCTTTTTCGACGATGGTTTCTTCTGCTCATGGGTACGGTGGAGGAGGGTGGGTAAACGCTCACGCCACTTTCTATGGAGGTAGCGATGCGTCTGGCACAATGGGTGGAGCATGTGGATATGGAAATCTATACAGCCAAGGCTACGGCACGAACACTGCAGCTCTAAGTACTGCTCTGTTCAACAGTGGATTAAGCTGTGGGTCCTGCTATGAAATCAAATGCGTTAATGACCGCAAATGGTGCCTCCCTGGCTCCATTGTCGTTACAGCGACCAACTTCTGCCCGCCAAACAACGCCTTACCCAACAACGCTGGAGGTTGGTGCAACCCGCCGCAGCACCATTTTGACCTCTCACAACCCGTTTACCAGCACATTGCTCAGTACAAAGCTGGAATCGTCCCAGTTGCCTACAGGAGGGTACCCTGTAACAGAAAGGGAGGTATAAGGTTCACAATCAACGGCCATTCTTACTTCAACTTGGTGCTGATAACTAATGTTGGAGGAGCTGGTGACGTGCACAGTGTTTCTGTTAAAGGGTCGAGAACTGGATGGCAAGCAATGTCCAGAAACTGGGGTCAGAATTGGCAGAGCAACACCTATCTCAATGGACAAAGCTTGTCGTTTAAGGTCACTACTAGTGACGGTCGGACTGTGGTCTCCTACAACGCGGCTCCTGCTGGGTGGTCCTTTGGGCAGACTTTTAGTGGTGCCCAATTCCATTAG | 750 | 50.93 | MAFVALLLVAFSTMVSSAHGYGGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIKCVNDRKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVYQHIAQYKAGIVPVAYRRVPCNRKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSVKGSRTGWQAMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVVSYNAAPAGWSFGQTFSGAQFH | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2741577 | 2743169 | + | Conep09aG0059100.1 | Cone9ag0581 | 444744 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0581 | 249 | SMART | dpbb_1 | 61 | 146 | IPR007112 | - | |
| Cone9ag0581 | 249 | Gene3D | - | 153 | 249 | IPR036749 | - | |
| Cone9ag0581 | 249 | Gene3D | - | 11 | 152 | IPR036908 | - | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 139 | 155 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 65 | 83 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 231 | 245 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 25 | 40 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 193 | 207 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin/Lol pI family signature | 43 | 61 | IPR007118 | GO:0005576(InterPro) | |
| Cone9ag0581 | 249 | Pfam | Lytic transglycolase | 61 | 146 | IPR009009 | - | |
| Cone9ag0581 | 249 | CDD | DPBB_EXPA_N | 25 | 151 | - | - | |
| Cone9ag0581 | 249 | SUPERFAMILY | Barwin-like endoglucanases | 7 | 174 | IPR036908 | - | |
| Cone9ag0581 | 249 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 166 | 245 | IPR007117 | - | |
| Cone9ag0581 | 249 | SUPERFAMILY | PHL pollen allergen | 153 | 244 | IPR036749 | - | |
| Cone9ag0581 | 249 | FunFam | Expansin | 156 | 248 | - | - | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 114 | 131 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 155 | 167 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 95 | 105 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 83 | 94 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 131 | 144 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 231 | 247 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 167 | 188 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 202 | 223 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | PRINTS | Expansin signature | 56 | 70 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | Pfam | Expansin C-terminal domain | 157 | 234 | IPR007117 | - | |
| Cone9ag0581 | 249 | PANTHER | EXPANSIN-A15 | 4 | 248 | IPR002963 | GO:0009664(InterPro) | |
| Cone9ag0581 | 249 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 44 | 156 | IPR007112 | - | |
| Cone9ag0581 | 249 | FunFam | Expansin | 15 | 152 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag0260 | Cone-Chr5:1106128 | Cone9ag0581 | Cone-Chr9:2741577 | 1.21E-126 | dispersed | |
| Cone7ag1075 | Cone-Chr7:8181630 | Cone9ag0581 | Cone-Chr9:2741577 | 2.13E-130 | dispersed | |
| Cone7ag1908 | Cone-Chr7:12234001 | Cone9ag0581 | Cone-Chr9:2741577 | 2.48E-116 | dispersed | |
| Cone8ag0340 | Cone-Chr8:1951447 | Cone9ag0581 | Cone-Chr9:2741577 | 7.80E-90 | dispersed | |
| Cone9ag0581 | Cone-Chr9:2741577 | Cone9ag0738 | Cone-Chr9:3513641 | 2.47E-87 | dispersed | |
| Cone13ag0949 | Cone-Chr13:8148708 | Cone9ag0581 | Cone-Chr9:2741577 | 1.12E-160 | wgd | |
| Cone13ag0065 | Cone-Chr13:406449 | Cone9ag0581 | Cone-Chr9:2741577 | 1.29E-154 | wgd | |
| Cone19ag0939 | Cone-Chr19:7191805 | Cone9ag0581 | Cone-Chr9:2741577 | 2.03E-163 | wgd | |
| Cone19ag0067 | Cone-Chr19:419124 | Cone9ag0581 | Cone-Chr9:2741577 | 2.15E-155 | wgd | |
| Cone2ag0518 | Cone-Chr2:2874278 | Cone9ag0581 | Cone-Chr9:2741577 | 3.67E-32 | wgd | |
| Cone4ag0531 | Cone-Chr4:2389577 | Cone9ag0581 | Cone-Chr9:2741577 | 2.09E-147 | wgd | |
| Cone6ag0576 | Cone-Chr6:2820883 | Cone9ag0581 | Cone-Chr9:2741577 | 1.07E-182 | wgd | |
| Cone7ag0505 | Cone-Chr7:2331133 | Cone9ag0581 | Cone-Chr9:2741577 | 2.24E-144 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0581 | - | - | - | 0.0 |