Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0583 ATGCAGAGTCAGAAAATGAACTTGGTTTTATCAACTGATCCTAAGCCCAGATTGAAATGGACTCCTGACCTTCATCAAAGATTTGTTGAAGCTGTCATTCAGCTTGGTGGAGCAGATAAGGCAACACCAAAGAGTTTGATGAGGCTATTGGGAATTCCTGGATTAAGTTTATACCACTTGAAGAGCCATTTACAGAAATACAGACTAGGGAAAAGCCAACAATCAGATGCTAGTTCCGACGATAAGCAGTCGGAAGATTATAAAGAGACTCAGAGTAGTGATGAGCATTTCATTCAGAGTCATAATAATGAAAGCTTGGAGATTGCTCAGGCCCTGAAAATGCAATTAGAAGTGCAGAGAAAACTGCATGAACAGATTGAGGTGCAGAGACATTTACAGCTTAGAATAGAAGCTCAGGGAAGGTATTTACAATCGGTACTAAGGAAAGCACAAGAAACAATTTCTGAATACCGTTCCCCTTCTTCCTCTTCTTCGGGCTTAGACACGGCAAAATCCGAGCTCTCTCATTTGGCATCCATGGTGAATACAAACTGCCCGAGTTCTTCAATCTCCGAATTAACCGAACTAGAAGGGTTGAGCTCTATCCATATCGAGACAAAGAAAATCAAATGCGGGACGATGTATTCCATGGAAAGTTCCTTGACGTCCTCGGAGAGTTCCGGAAGTAGGGAGGAAGAGAAGGAAAGGGCTTCCGTGGAGCTTTCCTTGATGGAGATCAATCCAGGGAGGAATGGTGGAAGGAAGAGAAGTGGAAGCACGATTTCAGATGGTAATTATTCCGTGGAAAGTGGTAACAACAAATTGTACAAGTTTAAGTTGTCTGAATCGATCGACTTGAACAAGCCAATATGA 873 42.38 MQSQKMNLVLSTDPKPRLKWTPDLHQRFVEAVIQLGGADKATPKSLMRLLGIPGLSLYHLKSHLQKYRLGKSQQSDASSDDKQSEDYKETQSSDEHFIQSHNNESLEIAQALKMQLEVQRKLHEQIEVQRHLQLRIEAQGRYLQSVLRKAQETISEYRSPSSSSSGLDTAKSELSHLASMVNTNCPSSSISELTELEGLSSIHIETKKIKCGTMYSMESSLTSSESSGSREEEKERASVELSLMEINPGRNGGRKRSGSTISDGNYSVESGNNKLYKFKLSESIDLNKPI 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2748275 2749800 - Conep09aG0059300.1 Cone9ag0583 444746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0583 290 Pfam MYB-CC type transfactor, LHEQLE motif 107 153 IPR025756 -
Cone9ag0583 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677(InterPro)
Cone9ag0583 290 MobiDBLite consensus disorder prediction 253 271 - -
Cone9ag0583 290 MobiDBLite consensus disorder prediction 69 95 - -
Cone9ag0583 290 MobiDBLite consensus disorder prediction 218 271 - -
Cone9ag0583 290 MobiDBLite consensus disorder prediction 78 95 - -
Cone9ag0583 290 Gene3D - 14 72 - -
Cone9ag0583 290 FunFam Two-component response regulator 11 75 - -
Cone9ag0583 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 245 IPR046955 GO:0003700(InterPro)
Cone9ag0583 290 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Cone9ag0583 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Cone9ag0583 290 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0559 Cone-Chr10:2597083 Cone9ag0583 Cone-Chr9:2748275 5.78E-47 dispersed
Cone8ag1607 Cone-Chr8:11908305 Cone9ag0583 Cone-Chr9:2748275 1.04E-31 dispersed
Cone9ag0583 Cone-Chr9:2748275 Cone7ag0579 Cone-Chr7:2779087 2.28E-10 dispersed
Cone19ag0942 Cone-Chr19:7219573 Cone9ag0583 Cone-Chr9:2748275 8.98E-74 wgd
Cone6ag0578 Cone-Chr6:2827842 Cone9ag0583 Cone-Chr9:2748275 1.65E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46805 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0583 - - - 0.0