Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0598 ATGGAGGCTTGCTTTATCAAATGCTCTCATAACAGCCTTCTCTTCAGAGCCTTTAAGCCTCTGCCTCTAGCCCGGCTCAAAACCTACCCCTGCTCTCCCATGGCGCTCCACTCCGGTGAAGGACGACGATTTGTTAAAAGAGCATACGATGCTTTACTGTTAGATGCCGGAGGAACACTTCTGCAGTTGGCGAAGCCTGTAGAAGATACTTATGCTGCCATTGGAACCAAATATGGTCTAACCACAACTCCTGCTGAAATAAAGCAAGGATTTAGGAGAGCTTTTGCTGCCCCCTGGCCTGAAAAATTACGGTACCAGGGAGATGGAAGGCCGTTTTGGAAACTAGTTGTCTCTGAAGCCACTGGTTGTGCTGATGAGAGTTATTTCGAAGAAGTTTATGAGTACTATGCAAGGGGTGAAGCTTGGCATCTTCCACATGGGGCTTTTGAAACCATAACCCTTCTCAAAGATAATGGAGTTAAGGTGGTGGTTGTGTCCAATTTTGACACCCGCTTAAGGAAACTATTGAAGGATCTAAGAGTTTTAAATCTGTTTGATGCAATGGTAATATCTTCAGAGGTTGGATATGAAAAACCAGATGCAAAAATATTTAAAGCTGCTTTAGAACAAGTCAGTGTGGAGGCCAAGAAAGCAGTACATGTTGGAGATGATGAAAAGGCAGATAAGAAAGGAGCAAATGCCGTCGGAATTTCTTGCTGGTTATGGGGAAGTGATGTAAAGACATTCTCAGATATCCAAGACAAAATCCTCGTGCCGGTGTCTTAA 786 44.02 MEACFIKCSHNSLLFRAFKPLPLARLKTYPCSPMALHSGEGRRFVKRAYDALLLDAGGTLLQLAKPVEDTYAAIGTKYGLTTTPAEIKQGFRRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCADESYFEEVYEYYARGEAWHLPHGAFETITLLKDNGVKVVVVSNFDTRLRKLLKDLRVLNLFDAMVISSEVGYEKPDAKIFKAALEQVSVEAKKAVHVGDDEKADKKGANAVGISCWLWGSDVKTFSDIQDKILVPVS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2824874 2826775 + Conep09aG0060800.1 Cone9ag0598 444761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0598 261 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 49 241 - -
Cone9ag0598 261 CDD HAD_dREG-2_like 148 258 - -
Cone9ag0598 261 SFLD Haloacid Dehalogenase 49 241 - -
Cone9ag0598 261 Gene3D - 65 137 IPR044924 -
Cone9ag0598 261 SUPERFAMILY HAD-like 49 246 IPR036412 -
Cone9ag0598 261 Gene3D - 53 243 IPR023214 -
Cone9ag0598 261 NCBIfam HAD hydrolase, REG-2-like, family IA 52 241 IPR011949 -
Cone9ag0598 261 NCBIfam HAD-IA family hydrolase 154 236 IPR006439 -
Cone9ag0598 261 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 203 223 IPR006439 -
Cone9ag0598 261 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 49 60 IPR006439 -
Cone9ag0598 261 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 155 168 IPR006439 -
Cone9ag0598 261 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 185 201 IPR006439 -
Cone9ag0598 261 PANTHER - 14 259 - -
Cone9ag0598 261 Pfam haloacid dehalogenase-like hydrolase 49 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0598 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0619 Cone-Chr13:6268517 Cone9ag0598 Cone-Chr9:2824874 2.36E-60 dispersed
Cone6ag0595 Cone-Chr6:2915284 Cone9ag0598 Cone-Chr9:2824874 1.01E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32