Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0603 ATGAGGATGAATAGGTACAGGCTTCAAGACGAGAGCCAGAACAAGCTCAATTATGCCTTGGCCCTAACTGTCGAGAACTTTCTAGAACGTCTACTCCAAACCCTCATGTTCAAGTTCGGTATGGCCAAGTCCATCCACCATGCTAGAGGTTGGGAGGCAAGTGGTGAATATTCCATCATTTATGGTAGGGTGGATTATCAGAAGCACATTGATTTCTCATTGACAAGTCCATTTGGAGGTGGGCGTGCAGAGTGA 255 46.27 MRMNRYRLQDESQNKLNYALALTVENFLERLLQTLMFKFGMAKSIHHARGWEASGEYSIIYGRVDYQKHIDFSLTSPFGGGRAE 84
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2841997 2842407 + Conep09aG0061300.1 Cone9ag0603 444766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0603 84 PANTHER 30S 40S RIBOSOMAL PROTEIN 2 49 IPR022801 GO:0003735(PANTHER)|GO:0015935(PANTHER)|GO:0019843(PANTHER)|GO:0019843(InterPro)|GO:0022627(PANTHER)|GO:0042274(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0603 K02997 - - sly:101261708 109.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0158 Cone-Chr16:946514 Cone9ag0603 Cone-Chr9:2841997 4.16E-31 wgd
Cone19ag0079 Cone-Chr19:476281 Cone9ag0603 Cone-Chr9:2841997 9.30E-06 wgd
Cone2ag0852 Cone-Chr2:34500870 Cone9ag0603 Cone-Chr9:2841997 3.80E-32 wgd
Cone4ag0551 Cone-Chr4:2488331 Cone9ag0603 Cone-Chr9:2841997 5.89E-31 wgd
Cone6ag0598 Cone-Chr6:2924005 Cone9ag0603 Cone-Chr9:2841997 8.61E-10 wgd
Cone7ag0526 Cone-Chr7:2437945 Cone9ag0603 Cone-Chr9:2841997 8.33E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g887 . . . . . . Bma14g01639 . Cmo04g01728 Cmo18g01184 . Cma18g01161 . Car18g01070 . Cpe09g00168 Cpe01g01457 Bhi07g01579 Tan04g1093 . Lac13g0308 . . . Cla05g02453 Cam05g2639 Cec05g2672 Cco05g2709 Clacu05g2642 Cmu05g2496 Cre05g2609 . . Cone6ag0598 Cone9ag0603 Lsi04g00436 Csa05g02438 . Cme10g00427 . Blo11g00768 Bda07g01465 . Bpe11g01638 . . . . . . Cma04g01649 . Car04g01689 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1