Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0608 ATGGCCGGGAATGCCGACTCATTGTCGATCAAGGTTTCCTACCGGAATCTGAAAGAGGCAGAAGTAGAAATGGTGGATGTGGACGATCTGCATCACCAACGAATTGAGCAGAATTCTAATTCACCTTCTTTTTCTAGTAGGTATTCCAATGGAAGTCCTGACCTCTCGTCGGAAATACCTCCTATCAGATCCAGGAAGAGTAGCTTGATGACTCTGATTCTCAGCTGTACAATCGCCGCCGGTGTTCAATTTGGCTGGGCTTTACAACTTTCCCTTCTGACTCCTTATATTCAGACACTTGGAATAGGGCATGCCTTTTCTTCATTTATTTGGCTTTGTGGTCCTATTACAGGTCTTGTGACATTTACAGGTTGGCTTCAAACTTCAAAGCTATGTGTATTGTGCATTTCCATGGCTTCATTGGATATGTTAATTTTATCTAAGGTTCAACCATGCGTTGGAATTTGGAGTGACAAGTGCTCTTCAAAATATGGAAGAAGACGCCCATTTATTTTAGTAGGAACCCTCATGATCTCGATTGCTGTGATATTAATTGGGTTTTCTGCTGACATTGGGCATATATTAGGGGATACAAACGAGGATTGCAGAACGTTTAAAGGTACTCGTACAATGGGAGCTTTTGTGTTTATTCTTGGGTTCTGGTTGCTAGATCTTGCCAACAATACAGTGCAGGGACCAGCTCGTGCTCTTCTAGCTGATCTATCAGGCCCTGATCAACGCAATTCAGCAAATGCAGTTTTTTGTTCGTGGATGGCCTTTGGCAACATCCTAGGATTTTCTGCTGGAGCTAGTGGAAATTGGCACAGATGGTTTCCTTTTGTGTTGAGCAGAGCTTGCTGTGAAGCTTGCGGAAATCTTAAAGCAGCGTTCATTGTGGCAGTGGTCTTCCTGTCTTTATGTACTCTTGTGACTCTATACTTTGCTGAAGAAGTTCCATTCACTGCCAATCATCCACACCGCTTGTCAGATTCTGCTCCCTTGTTGAATGATCATTCGCAAAATGATCTGGACCGTTCAAAACCAGGAACTAACATGGAAGTTATTGACAATGTCAATGGAAAGTTCATTGAAAATGGCTATGAAAGGGATGCAAATTTAAATCATGTCAAACCAAAAATCATCAAAGTTCCAACTGAAAGTTATACTGATGGCCCTGGAGCAGTTATGGTCAAATTGCTTACCAGTTTAAGACACCTACCTCCTGCTATGCATTCAGTTCTTATTGTTATGGCTCTTAGTTGGCTATCATGGTTTCCCTTCTTTCTATTTGATACGGATTGGATGGGAAGAGAAGTTTATCATGGTGACCCAACAGGCAATGCTGCTAATGTACAGTCTTATGATCGGGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTCGCCATCAGTTCTTTCCTTATAGAACCAATGTGTCAACGGATGGGAGCAAGACTTGTCTGGGCAATAAGTAATTTTATAGTATTTGCCTGTATGGCAGGAACTGCTATCATAACTTTAATATCCGTTGGTCAATATTCTAAAGGGATAGAACATGTTATTGGAGCGAATGAAACTATCAAAATTGCTTCTTTGGTCGTATTTTCTCTTCTTGGCTTTCCTCTTGCTATTACCTATAGTGTTCCCTTTTCTATAACGGCAGAGCTGACTGCTGATACTGGTGGCGGGCAAGGACTGGCTATTGGAGTTTTGAATCTTGCGATTGTTGTGCCTCAGATGATTGTATCACTTGGTGCGGGGCCCTGGGATGCATTATTCGGTGGAGGAAATATCCCGGCCTTTGTTTTGGCTTCATTCAGTGCTCTTGCAGCTGGAATTATCGCAATTCTTAAATTGCCCGATATATCTAGCAATTCTCTCAAGCCATCTGGTTTTCATTTTGGCTGA 1920 42.19 MAGNADSLSIKVSYRNLKEAEVEMVDVDDLHHQRIEQNSNSPSFSSRYSNGSPDLSSEIPPIRSRKSSLMTLILSCTIAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVTFTGWLQTSKLCVLCISMASLDMLILSKVQPCVGIWSDKCSSKYGRRRPFILVGTLMISIAVILIGFSADIGHILGDTNEDCRTFKGTRTMGAFVFILGFWLLDLANNTVQGPARALLADLSGPDQRNSANAVFCSWMAFGNILGFSAGASGNWHRWFPFVLSRACCEACGNLKAAFIVAVVFLSLCTLVTLYFAEEVPFTANHPHRLSDSAPLLNDHSQNDLDRSKPGTNMEVIDNVNGKFIENGYERDANLNHVKPKIIKVPTESYTDGPGAVMVKLLTSLRHLPPAMHSVLIVMALSWLSWFPFFLFDTDWMGREVYHGDPTGNAANVQSYDRGVREGAFGLLLNSVVLAISSFLIEPMCQRMGARLVWAISNFIVFACMAGTAIITLISVGQYSKGIEHVIGANETIKIASLVVFSLLGFPLAITYSVPFSITAELTADTGGGQGLAIGVLNLAIVVPQMIVSLGAGPWDALFGGGNIPAFVLASFSALAAGIIAILKLPDISSNSLKPSGFHFG 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2869636 2875715 + Conep09aG0061800.1 Cone9ag0608 444771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0608 639 SUPERFAMILY MFS general substrate transporter 144 626 IPR036259 -
Cone9ag0608 639 CDD MFS_SLC45_SUC 72 621 - -
Cone9ag0608 639 Gene3D MFS general substrate transporter like domains 62 623 IPR036259 -
Cone9ag0608 639 MobiDBLite consensus disorder prediction 331 350 - -
Cone9ag0608 639 Pfam Major Facilitator Superfamily 144 579 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cone9ag0608 639 FunFam Sucrose transport protein SUT5 411 631 - -
Cone9ag0608 639 PANTHER SUGAR TRANSPORTER 65 620 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cone9ag0608 639 MobiDBLite consensus disorder prediction 37 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0608 K15378 - - mdm:103402916 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0603 Cone-Chr6:2956879 Cone9ag0608 Cone-Chr9:2869636 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g880 Blo01g00422 . Bda01g02166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0603 Cone9ag0608 . . . . . . . . . Bpe02g02352 Bma01g00089 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41