Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0609 ATGACTAGCAATTGGATGGCTTTCTTCCCCACAAACTTTATTCTTCAAAACCCACATGACGAACATGATGATCACCATCATCAACCTTCTACCACTCTCAACCCTATTCTCACCTCTTGCACACCTCAAGACTTCCATGGAGTAGCATCGTTTTCAGGGAAGAGATCGATGTCGTTTTCGGGACTCGAGATGGCGGCTCATGATCAAGAAGGCAACATGAACGGTGAGGAGGAATTATCAGACGATGAGGGGTCACAAGCAGGGGAGAAGAAGAGGAGGCTAAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGTTGGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGTTGGCCAGAGCTCTTGGTCTTCAGCCTAGACAGATTGCTATCTGGTTCCAGAACAGAAGAGCCAGGTGGAAGACAAAGCAATTGGAGAAAGACTATGATCTTCTTAAAAGGCAGTTTGAAGCCATTAAAGCTGAGAATGAAGCTCTTCAAGGTCGCAACCAAAAACTTCAAGCAGAGATGTTAGCACTAAGAAGTAGAGAACCGACAGAATCGATCAACCTCAACAAAGAAACAGATCAGGGTTCTTGCAGCAATAGAAGTGAGAACAGCTCTGATAATAACATCAAACTCGATACCTCAAGAACTGCTCCAACTATCGATAGCCCCTTATCAACTCATAATCATCATCATCAGCATCATCATACTCCGATTATTACGACGACAGCCGCTGCTAATACAACAAGCAGATCATCACCGCATCATCATCATGCCGGTCAAGGCCAAATCATGTTTCAATCAGAAGCTTCCATAAGGCCTAATCCTCCGCCAGTTGTAGCGCAGCTCTTTCAAGACTCTTCTTCGTCTAGACGTACTAATAGTAACATTCATGATCAAATGGTTAAAGAAGAAAGCTTGAGCAACATTTTCTGTGGGATTGATGATCAGTCTGGGTTTTGGCCTTGGTTGGAACAGCCTCATTTTAATTAA 1005 43.58 MTSNWMAFFPTNFILQNPHDEHDDHHHQPSTTLNPILTSCTPQDFHGVASFSGKRSMSFSGLEMAAHDQEGNMNGEEELSDDEGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKAENEALQGRNQKLQAEMLALRSREPTESINLNKETDQGSCSNRSENSSDNNIKLDTSRTAPTIDSPLSTHNHHHQHHHTPIITTTAAANTTSRSSPHHHHAGQGQIMFQSEASIRPNPPPVVAQLFQDSSSSRRTNSNIHDQMVKEESLSNIFCGIDDQSGFWPWLEQPHFN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2879326 2881845 + Conep09aG0061900.1 Cone9ag0609 444772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0609 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 252 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone9ag0609 334 Gene3D - 82 151 - -
Cone9ag0609 334 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone9ag0609 334 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677(InterPro)
Cone9ag0609 334 Pfam Homeodomain 90 143 IPR001356 GO:0003677(InterPro)
Cone9ag0609 334 SMART HOX_1 88 149 IPR001356 GO:0003677(InterPro)
Cone9ag0609 334 MobiDBLite consensus disorder prediction 71 91 - -
Cone9ag0609 334 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0609 334 CDD homeodomain 90 146 IPR001356 GO:0003677(InterPro)
Cone9ag0609 334 FunFam Homeobox-leucine zipper protein ATHB-13 82 149 - -
Cone9ag0609 334 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677(InterPro)
Cone9ag0609 334 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677(InterPro)
Cone9ag0609 334 MobiDBLite consensus disorder prediction 193 230 - -
Cone9ag0609 334 SUPERFAMILY Homeodomain-like 83 147 IPR009057 -
Cone9ag0609 334 Coils Coil 137 185 - -
Cone9ag0609 334 MobiDBLite consensus disorder prediction 186 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1545 Cone-Chr6:12138232 Cone9ag0609 Cone-Chr9:2879326 1.29E-24 dispersed
Cone9ag0609 Cone-Chr9:2879326 Cone9ag1462 Cone-Chr9:10830702 1.22E-24 dispersed
Cone9ag0609 Cone-Chr9:2879326 Cone9ag0617 Cone-Chr9:2933324 9.50E-25 proximal
Cone13ag0969 Cone-Chr13:8272664 Cone9ag0609 Cone-Chr9:2879326 4.67E-76 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone9ag0609 Cone-Chr9:2879326 5.20E-44 wgd
Cone16ag0147 Cone-Chr16:853202 Cone9ag0609 Cone-Chr9:2879326 3.77E-25 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone9ag0609 Cone-Chr9:2879326 9.38E-74 wgd
Cone2ag0185 Cone-Chr2:961623 Cone9ag0609 Cone-Chr9:2879326 2.77E-41 wgd
Cone6ag0604 Cone-Chr6:2966504 Cone9ag0609 Cone-Chr9:2879326 1.50E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46810 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0609 K09338 - rcu:8286990 406.757