Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0612 ATGTCGACTCCTGCAAGGAAGAGACTTATGAGGGATTTTAAGAGGTTGCAACAAGATCCTCCTGCTGGAATAAGCGGGGCACCACACGACAACAACATTACGCTTTGGAATGCTGTAATATTTGGCCCTGATGATACCCCATGGGATGGAGGTACGTTTAAGTTGAGTCTCCAGTTTACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCACGAATGTTCCACCCAAATATATACGCAGATGGAAGCATATGTTTGGACATTTTGCAAAACCAGTGGAGTCCTATCTATGATGCAGCCGCTATACTTACCTCAATCCAGTCATTACTGTGTGATCCAAACCCAAACTCTCCAGCCAATTCTGAAGCTGCCCGGATGTTCAGCGAAAACAAACGGGAATACAATAGGAGAGTACGTGAAGTTGTTGAGCAGAGTTGGACTGCTGATTAG 459 44.88 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLSLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDAAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2902721 2905026 - Conep09aG0062600.1 Cone9ag0612 444775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0612 152 CDD UBCc 7 145 IPR000608 -
Cone9ag0612 152 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Cone9ag0612 152 SMART ubc_7 7 150 - -
Cone9ag0612 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Cone9ag0612 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Cone9ag0612 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Cone9ag0612 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cone9ag0612 152 FunFam Ubiquitin-conjugating enzyme E2 2 1 148 - -
Cone9ag0612 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0612 K10573 - - mdm:103447849 303.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1344 Cone-Chr1:56516994 Cone9ag0612 Cone-Chr9:2902721 1.64E-35 dispersed
Cone7ag0902 Cone-Chr7:7088979 Cone9ag0612 Cone-Chr9:2902721 8.05E-31 dispersed
Cone9ag0612 Cone-Chr9:2902721 Cone9ag0830 Cone-Chr9:4054886 1.37E-42 dispersed
Cone13ag0975 Cone-Chr13:8299845 Cone9ag0612 Cone-Chr9:2902721 1.79E-106 wgd
Cone13ag0084 Cone-Chr13:521008 Cone9ag0612 Cone-Chr9:2902721 5.56E-110 wgd
Cone19ag0965 Cone-Chr19:7339466 Cone9ag0612 Cone-Chr9:2902721 3.22E-109 wgd
Cone19ag0084 Cone-Chr19:492054 Cone9ag0612 Cone-Chr9:2902721 1.75E-78 wgd
Cone6ag0608 Cone-Chr6:3008911 Cone9ag0612 Cone-Chr9:2902721 4.76E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71