Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0613 ATGCAGCGACTCCATTTGCTATCTTCATCTTCCTTCACTCCTCAACTGCCACTTTCCCCCCATACCTCCTCTACCTCCTCCTTATTCTCTACTTGCTCCGTTTTGAACTCCAATCCATATCGCGGCCTTCCCTCTCAGATCTCTGCTCGAAAACTCTCCCTGAAATGCCGCTACTCCGAGTACTACGAGCAGCAGCAGCAACAACAGAGATTCGATTCCGGAACCAATTCAAGCAACTCCATTGCTCCACAAGCTCGCCCTCCAGGTGTTGGAGCATCGTTGCCTAGGTATTATGTAGGTCATTCGATATACAAAGGGAAGGCAGCTCTTACAGTCGAGCCTAAGGCTCCGGAATTTACTCCACTAGATTCAGGAGCGTTGAAACTATCCAAAGAAGGCTTTGTTCTGCTTCAGTTTGCGCCTGCATCTGGCGTTCGTCAATATGATTGGAGTAGAAAGCAGGTGTTCTCTCTATCTGTGAGTGAAATTGGAGCTCTAGTTGCCCTTGGTCTAAGGGAGTCATGTGAATTTTTTCATGATCCTTTTAAGGGAAAAAGTGATGAAGGCAAGGTCAGAAAGGTATTGAAAGTGGAGCCTCTTCCCGATGGTTCTGGCCACTTCTTCAATCTCAGCGTGCAGAACAAGCTCATCAACACGGATGATAATATTTATATTCCCATCACCAAAGCAGAGTATGCTGTACTTGTGTCGGCTTTCAATTATATCTTACCGTTCTGTTTGGGTTGGCATTCCTTTGTGAATTCGATAAAGCCAGAAGATACAACCCGGGTAAATAATGTCAATCCCAAATATGGAGGAGACTATGAATGGAGCAGATAG 840 45.71 MQRLHLLSSSSFTPQLPLSPHTSSTSSLFSTCSVLNSNPYRGLPSQISARKLSLKCRYSEYYEQQQQQQRFDSGTNSSNSIAPQARPPGVGASLPRYYVGHSIYKGKAALTVEPKAPEFTPLDSGALKLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVSEIGALVALGLRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINTDDNIYIPITKAEYAVLVSAFNYILPFCLGWHSFVNSIKPEDTTRVNNVNPKYGGDYEWSR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2905174 2907621 - Conep09aG0062700.1 Cone9ag0613 444776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0613 279 MobiDBLite consensus disorder prediction 67 88 - -
Cone9ag0613 279 Pfam Whirly transcription factor 103 237 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone9ag0613 279 Gene3D Transcriptional Coactivator Pc4; Chain A 89 261 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0613 279 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 47 279 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone9ag0613 279 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 89 263 - -
Cone9ag0613 279 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 279 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0613 279 MobiDBLite consensus disorder prediction 67 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1151 Cone-Chr4:9869591 Cone9ag0613 Cone-Chr9:2905174 1.38E-49 dispersed
Cone6ag0609 Cone-Chr6:3011776 Cone9ag0613 Cone-Chr9:2905174 4.33E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46812 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0613 K26559 - mdm:103402929 358.607