Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0613 | ATGCAGCGACTCCATTTGCTATCTTCATCTTCCTTCACTCCTCAACTGCCACTTTCCCCCCATACCTCCTCTACCTCCTCCTTATTCTCTACTTGCTCCGTTTTGAACTCCAATCCATATCGCGGCCTTCCCTCTCAGATCTCTGCTCGAAAACTCTCCCTGAAATGCCGCTACTCCGAGTACTACGAGCAGCAGCAGCAACAACAGAGATTCGATTCCGGAACCAATTCAAGCAACTCCATTGCTCCACAAGCTCGCCCTCCAGGTGTTGGAGCATCGTTGCCTAGGTATTATGTAGGTCATTCGATATACAAAGGGAAGGCAGCTCTTACAGTCGAGCCTAAGGCTCCGGAATTTACTCCACTAGATTCAGGAGCGTTGAAACTATCCAAAGAAGGCTTTGTTCTGCTTCAGTTTGCGCCTGCATCTGGCGTTCGTCAATATGATTGGAGTAGAAAGCAGGTGTTCTCTCTATCTGTGAGTGAAATTGGAGCTCTAGTTGCCCTTGGTCTAAGGGAGTCATGTGAATTTTTTCATGATCCTTTTAAGGGAAAAAGTGATGAAGGCAAGGTCAGAAAGGTATTGAAAGTGGAGCCTCTTCCCGATGGTTCTGGCCACTTCTTCAATCTCAGCGTGCAGAACAAGCTCATCAACACGGATGATAATATTTATATTCCCATCACCAAAGCAGAGTATGCTGTACTTGTGTCGGCTTTCAATTATATCTTACCGTTCTGTTTGGGTTGGCATTCCTTTGTGAATTCGATAAAGCCAGAAGATACAACCCGGGTAAATAATGTCAATCCCAAATATGGAGGAGACTATGAATGGAGCAGATAG | 840 | 45.71 | MQRLHLLSSSSFTPQLPLSPHTSSTSSLFSTCSVLNSNPYRGLPSQISARKLSLKCRYSEYYEQQQQQQRFDSGTNSSNSIAPQARPPGVGASLPRYYVGHSIYKGKAALTVEPKAPEFTPLDSGALKLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVSEIGALVALGLRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINTDDNIYIPITKAEYAVLVSAFNYILPFCLGWHSFVNSIKPEDTTRVNNVNPKYGGDYEWSR | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2905174 | 2907621 | - | Conep09aG0062700.1 | Cone9ag0613 | 444776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0613 | 279 | MobiDBLite | consensus disorder prediction | 67 | 88 | - | - | |
Cone9ag0613 | 279 | Pfam | Whirly transcription factor | 103 | 237 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cone9ag0613 | 279 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 89 | 261 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone9ag0613 | 279 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 47 | 279 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cone9ag0613 | 279 | FunFam | Single-stranded DNA-binding protein WHY2, mitochondrial | 89 | 263 | - | - | |
Cone9ag0613 | 279 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 95 | 279 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone9ag0613 | 279 | MobiDBLite | consensus disorder prediction | 67 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1151 | Cone-Chr4:9869591 | Cone9ag0613 | Cone-Chr9:2905174 | 1.38E-49 | dispersed | |
Cone6ag0609 | Cone-Chr6:3011776 | Cone9ag0613 | Cone-Chr9:2905174 | 4.33E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46812 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0613 | K26559 | - | mdm:103402929 | 358.607 |