Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0625 ATGGCTGAATCGGTGGAGCTTCCTAGTCGACTTGGAATCCTTCCCTTCAGGAACAAGGTCCTCTTACCTGGTGCAATAATTCGTATTCGGTGCACTTCATCAAGCAGCGTGAAACTGGTGGAGCAAGAGTTGTGGCAGAGGGAAGAGAAGGGATTGATTGGTATTCTTCCTGTTCGTGATGCTGCTGAGGCAAAATCAATAGGTCCCATCTTATCTCCAAGTATGGGAAGTGATTCAGGGGACCATAGCTTGCGAATTCAAGGTGGAAACTCAGAGTCTCACAGGCTTGATGGAAAAAATGAGCAGGAAGTTATTCGTTGGCATAGGAGGGGTGTTGCTGCACGCGCCTTACATCTGTCTAGAGGTGTGGAGAAACCAAGTGGAAGGGTCACTTATACAGTTGTCCTTGAAGGTTTGTGTAGATTCAACGTCCAAGAACTTAGCACTAGAGGAACATATTATACTGCAAGGATATCTCCTCTTGAAATAACAAAGGCAGAGTTGGAGCAAGTGGAGCAGGATCCAGATTTCATTTCGTTGTCCCGGCAATTCAAAGCAACTGCTATGGAGCTGATTTCTGTTCTAGAGCAGAAACAAAAAACTGGAGGAAGAACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAATTGGCAGACATATTTGTTGCGAGCTTTGAGATAAGTTTTGAAGAGCAATTGTCTATGTTGGAGTCAGTTGATTTAAAAGTAAGGCTTTCCAAAGCTATGGAGTTAGTTGACAGGCATTTACAGTCAATACGAGTTGCTGAGAAGATCACACAAAAGGTTGAGGGTCAGCTATCAAAATCACAGAAAGAATATCTTTTGCGCCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGTGACAATGACGATGATGAAGATGATGTGGCTTCTCTGGAGAGAAAAATGCAAAGTGCAGGAATGCCTTCAAATATCTGGAAGCATGCACAAAGAGAGTTGAGGACACTAAAAAAGATGCAACCTCAGCAGCCTGGGTATAACAGTTCCCGTGTTTACCTGGAGCTTCTTGCCGACCTTCCTTGGCAAAAGGCAACTGAAGAACAAGAATTAGACTTGAAAGCTGCAAAGGAACGTCTTGACAACGATCATTATGGTCTTGTCAAGGTCAAGCAACGGATCATTGAGTATCTGGCTGTTCGCAAGCTTAAGCCAGATGCAAGAGGTCCAGTATTGTGCTTTGTTGGTCCACCGGGTGTGGGGAAAACATCTCTGGCATCATCTATTGCTGCTGCTTTGGGCAGGAAGTTTATACGTATATCCCTTGGTGGTGTTAAGGATGAGGCTGACATTAGGGGCCATAGAAGGACATACATTGGAAGCATGCCAGGGCGTCTCATTGATGGATTGAAGAGGGTAGCTGTTTGCAATCCAGTCATGCTATTAGATGAAATTGACAAGACAGGTTCTGATGTGCGTGGGGATCCTGCTTCAGCTTTACTGGAGGTTCTTGACCCTGAGCAGAACACAAAATTCAATGATCACTATTTGAATGTCCCATATGACCTTTCAAAAGTAGTTTTTGTGACAACTGCTAATAAAGCGCAGCCTATTCCCCCACCACTCCTAGACAGAATGGAGGTCATTGAGCTGCCTGGATATACGCCTGAAGAAAAGCTCAAGATTGCAATGCGACATCTAATTCCAAGAGTCCTTGAACAACATGGGTTGAGCTCTGATTTTCTTCAAATTCCTGAGGCTATGGTGAAGCATGTTATTCAAAGGTATACTAGAGAGGCTGGTGTTCGGAGTCTTGAGAGGAATCTTTCTGCCTTGGCTCGTGCAGCAGCAGTTAGAGTTGTGGAACAAGAACAATCTGTGCCAATTTGCCAAGGTGTGCAACAGCTCGCCTCACCATTGATAGAAAACAGACTCACTGATAGTGCTGAAGTAGAAATGGAGGTCATTCCATTGGAAGTAAACAATGATGAGATATCAAATACATTCAGGACTGCTTCGCCTTTGGTAGTGGATGAGACCATCCTGGAAAAGATATTGGGGCCTCCAAGGTTTGATGATAGAGAGGCTGCAGAACGAGTCGCGACACCTGGGATAGCTGTTGGGCTTGTTTGGACTGCATTTGGGGGAGAGGTCCAGTTTGTGGAGGCTACAATAATGGTGGGAAAGGGTGAATTACATCTCACCGGCCAGCTTGGTGATGTTATCAAAGAATCAGCCAAAATAGCACTGACATGGGTTAGAGCGAGGGCAACAGATCTTAGATTTACAAGAGCTGGAGAAACCAATATATTGGAGGACCGGGATATTCACATACATTTCCCTGCTGGTGCAGTACCTAAAGATGGGCCCTCAGCGGGGGTGACCCTAGTTACTGCCCTAGTCTCATTGCTCAGTCAGAAGAAGGTTAGAGCAGATACTGCAATGACAGGAGAGATGACGCTGAGGGGTCTTGTGCTTCCTGTTGGTGGTATCAAGGACAAGATATTAGCAGCACACCGTTGTGGGGTCAAAAGAGTAATCCTCCCAGAGAGAAACTTGAAAGATTTAGTGGAAGTACCTTCAGCTGTGCTTGCCAGTCTGGAGATATTACTTGCAAAACGCATGGAAGATGTATTGGAGCAGGCTTTTGAAGGCGGGTGCCCGTGGAGGCAACACTCCAAGTTATGA 2667 45.29 MAESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDAAEAKSIGPILSPSMGSDSGDHSLRIQGGNSESHRLDGKNEQEVIRWHRRGVAARALHLSRGVEKPSGRVTYTVVLEGLCRFNVQELSTRGTYYTARISPLEITKAELEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLESVDLKVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEYLLRQQMRAIKEELGDNDDDEDDVASLERKMQSAGMPSNIWKHAQRELRTLKKMQPQQPGYNSSRVYLELLADLPWQKATEEQELDLKAAKERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNTKFNDHYLNVPYDLSKVVFVTTANKAQPIPPPLLDRMEVIELPGYTPEEKLKIAMRHLIPRVLEQHGLSSDFLQIPEAMVKHVIQRYTREAGVRSLERNLSALARAAAVRVVEQEQSVPICQGVQQLASPLIENRLTDSAEVEMEVIPLEVNNDEISNTFRTASPLVVDETILEKILGPPRFDDREAAERVATPGIAVGLVWTAFGGEVQFVEATIMVGKGELHLTGQLGDVIKESAKIALTWVRARATDLRFTRAGETNILEDRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLSQKKVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRCGVKRVILPERNLKDLVEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRQHSKL 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2964845 2971300 - Conep09aG0063900.1 Cone9ag0625 444788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0625 888 NCBIfam endopeptidase La 13 876 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 Gene3D - 695 881 IPR014721 -
Cone9ag0625 888 MobiDBLite consensus disorder prediction 70 98 - -
Cone9ag0625 888 Pfam ATPase family associated with various cellular activities (AAA) 405 542 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0625 888 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 6 886 IPR027065 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0005524(InterPro)|GO:0005782(PANTHER)|GO:0006625(PANTHER)|GO:0016485(PANTHER)|GO:0030163(InterPro)
Cone9ag0625 888 Pfam Lon protease AAA+ ATPase lid domain 566 618 IPR054594 -
Cone9ag0625 888 PIRSF Lon_proteas 651 879 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 PIRSF Lon_proteas 1 636 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 ProSiteProfiles Lon N-terminal domain profile. 11 256 IPR003111 -
Cone9ag0625 888 Coils Coil 289 309 - -
Cone9ag0625 888 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 781 789 IPR008268 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Cone9ag0625 888 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 888 IPR027501 GO:0004252(InterPro)|GO:0006515(InterPro)
Cone9ag0625 888 SMART AAA_5 401 546 IPR003593 GO:0016887(InterPro)
Cone9ag0625 888 ProSiteProfiles Lon proteolytic domain profile. 693 878 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 SMART lon_5 10 254 IPR003111 -
Cone9ag0625 888 CDD RecA-like_Lon 366 547 - -
Cone9ag0625 888 Gene3D - 1 162 IPR046336 -
Cone9ag0625 888 FunFam Lon protease homolog 2, peroxisomal 366 544 - -
Cone9ag0625 888 Gene3D - 366 544 IPR027417 -
Cone9ag0625 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 778 797 - -
Cone9ag0625 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Cone9ag0625 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 831 849 - -
Cone9ag0625 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 696 712 - -
Cone9ag0625 888 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 808 827 - -
Cone9ag0625 888 MobiDBLite consensus disorder prediction 72 90 - -
Cone9ag0625 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 620 IPR027417 -
Cone9ag0625 888 Gene3D - 545 684 - -
Cone9ag0625 888 Pfam ATP-dependent protease La (LON) substrate-binding domain 12 254 IPR003111 -
Cone9ag0625 888 FunFam Lon protease homolog 2, peroxisomal 172 297 - -
Cone9ag0625 888 FunFam Lon protease homolog 2, peroxisomal 690 881 - -
Cone9ag0625 888 Gene3D - 171 297 - -
Cone9ag0625 888 SUPERFAMILY Ribosomal protein S5 domain 2-like 696 875 IPR020568 -
Cone9ag0625 888 Gene3D - 305 353 - -
Cone9ag0625 888 Pfam Lon protease (S16) C-terminal proteolytic domain 670 877 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cone9ag0625 888 FunFam Lon protease homolog 304 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0625 K01338 - - mdm:103411613 1504.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0814 Cone-Chr10:4142655 Cone9ag0625 Cone-Chr9:2964845 3.86E-140 dispersed
Cone3ag0841 Cone-Chr3:4306879 Cone9ag0625 Cone-Chr9:2964845 1.56E-144 dispersed
Cone6ag0622 Cone-Chr6:3091300 Cone9ag0625 Cone-Chr9:2964845 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35