Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0626 ATGGATTCTTCTGCAACAACGAGGAGACCTTGTTTCGTCGAAGAAGATGACGGTCTAGCTTCACTGGTTGATATGGAAGCTGGAATTTCCGGAAACAACGTCGCTGTGTTTTCCAGATCTCTTTACTACAACAGTACAGCCTTCTCTTCTTATAGGAAAAGAACAGGAGGTAGTTTTGGAAATTCCTCTCCTAGATCTGGAAGGTTCTTCTACGATTCTAGATTCGAAGATCATCATCATCATCATCAGCCTTATTTCCTCGACGCTTGTTCTTTATGCCAAAAACCCCTCGTTGATAACAGAGACATCTTCATGTACAGAGGGGACACGCCATTTTGCAGCGAGGAGTGCAGGCAAGAGCAAATAGACATCGATGAAGCGAAGGAAAATAGCTTTAAGTTCTCTATGAAGAAGGCTTTGAGGAAGAAGGAGCAGATGAAATCCGATTCTTCCAACAAGTCCTCCGCTCAGGACTATCCTTTCCGAACTAGCACCGTCGCAGCTGCTTAG 510 44.51 MDSSATTRRPCFVEEDDGLASLVDMEAGISGNNVAVFSRSLYYNSTAFSSYRKRTGGSFGNSSPRSGRFFYDSRFEDHHHHHQPYFLDACSLCQKPLVDNRDIFMYRGDTPFCSEECRQEQIDIDEAKENSFKFSMKKALRKKEQMKSDSSNKSSAQDYPFRTSTVAAA 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2982164 2983166 + Conep09aG0064000.1 Cone9ag0626 444789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0626 169 ProSiteProfiles Zinc finger FLZ-type profile. 85 129 IPR007650 -
Cone9ag0626 169 MobiDBLite consensus disorder prediction 142 169 - -
Cone9ag0626 169 MobiDBLite consensus disorder prediction 150 169 - -
Cone9ag0626 169 PANTHER FCS-LIKE ZINC FINGER 1-RELATED 62 168 IPR044533 -
Cone9ag0626 169 Pfam zinc-finger of the FCS-type, C2-C2 77 128 IPR007650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1353 Cone-Chr4:11033268 Cone9ag0626 Cone-Chr9:2982164 4.07E-14 dispersed
Cone9ag0626 Cone-Chr9:2982164 Cone9ag1497 Cone-Chr9:10993963 5.01E-11 dispersed
Cone6ag0624 Cone-Chr6:3123090 Cone9ag0626 Cone-Chr9:2982164 3.43E-87 wgd
Cone8ag0443 Cone-Chr8:2780189 Cone9ag0626 Cone-Chr9:2982164 4.79E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g581 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0620 . Cone6ag0624 Cone9ag0626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003889 1 1 4 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 0 43