Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0627 ATGAAGTGCTTCTTTTTTGGATTCAAAGCGAAAAGAAGATCGGAGTCGGCTCCGGTGCTAACAGTCAGTAGTACTAATAACATATCATCATCAGGCTCAGGACCTTCTCCAAGAGGAATACCAGAATTGTACAAAGAGAAGGAAAATAGTCTAAAAGTTTTCTCTTTACAAGAGCTCATAGATGCAACCAATGGTTTGAGCAGATTTGCAATTATAGGGGAAGGTGGTTTTGGAACTGTGTATAAAGGAGCTGTTAGGCTTCATGATGATGATGGTCTAACTGATCCAACTCTTGTTGCCATAAAAAAGCTTAAACCTGATAGCTTACAGGGTCACAAAGAATGGCTGGCAGAAGTTCAATTTTTGGGTGTAGTAAGTCACCCAAATCTAGTAAAACTTTTAGGATATTGTTCTGAGGATGGAGAGAGAGGGATGCAACGGCTACTAGTATACGAGTACATGCCAAATGGGAGCCTTGAAAATCATCTTTTTAGCAAGGGTCTTCCTCATCTGTCTTGGAAGAAAAGGTTACAGATTATACTAGGTGCTGCTCAAGGATTGGCTTATCTACATGGAGGATTAGAAATCCAGGTAATATATCGAGATTTTAAATCCTCGAATGTGCTCTTGGATGCTGATTTTAAGCCTAAGCTTTCGGATTTTGGGCTTGTTAGAGAAGGACCGACCGGTGACCGTACTCATGTTTCAACTGCAGTGGTAGGGACGTATGGATACGCTGCGCCAGAATATTTACAGACAGGCCATCTCAAGAGCTATAGTGACATATGGAGTTTTGGTGTGGTGCTCTATGAGATTCTAACGGGAAGGCGGGCATTGGATAGAAACCGCCCGAAAACAGAGCAGAAACTATTAGATTGGGTGAAACTATATCCAGTAGATAGTAAAAGGTTTAGAATGATAATGGACCCGAAGCTTGGAAACCAATATCCTTCGGCCGCAGCTCGGGCAGTTGCCAGGCTGGCAGATAGGTGTCTGAGCAAGAATGAAAAGGACCGGCCGGTAATGAGTGAGGTGGTAGAGTGTTTGAAGCAAGCGTTGAGAGATTCGGAAGAGAGAAACGACTCCAGAGAGCAATAG 1098 43.08 MKCFFFGFKAKRRSESAPVLTVSSTNNISSSGSGPSPRGIPELYKEKENSLKVFSLQELIDATNGLSRFAIIGEGGFGTVYKGAVRLHDDDGLTDPTLVAIKKLKPDSLQGHKEWLAEVQFLGVVSHPNLVKLLGYCSEDGERGMQRLLVYEYMPNGSLENHLFSKGLPHLSWKKRLQIILGAAQGLAYLHGGLEIQVIYRDFKSSNVLLDADFKPKLSDFGLVREGPTGDRTHVSTAVVGTYGYAAPEYLQTGHLKSYSDIWSFGVVLYEILTGRRALDRNRPKTEQKLLDWVKLYPVDSKRFRMIMDPKLGNQYPSAAARAVARLADRCLSKNEKDRPVMSEVVECLKQALRDSEERNDSREQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2988239 2990743 - Conep09aG0064100.1 Cone9ag0627 444790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0627 365 MobiDBLite consensus disorder prediction 21 36 - -
Cone9ag0627 365 CDD STKc_IRAK 72 351 - -
Cone9ag0627 365 ProSitePatterns Protein kinases ATP-binding region signature. 72 103 IPR017441 GO:0005524(InterPro)
Cone9ag0627 365 ProSiteProfiles Protein kinase domain profile. 66 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0627 365 Gene3D Transferase(Phosphotransferase) domain 1 154 365 - -
Cone9ag0627 365 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 363 - -
Cone9ag0627 365 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
Cone9ag0627 365 MobiDBLite consensus disorder prediction 21 40 - -
Cone9ag0627 365 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Cone9ag0627 365 Pfam Protein tyrosine and serine/threonine kinase 71 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0627 365 PANTHER OS01G0588500 PROTEIN-RELATED 46 352 IPR050823 -
Cone9ag0627 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0627 365 PIRSF TyrPK_CSF1-R 165 365 - -
Cone9ag0627 365 PIRSF TyrPK_CSF1-R 64 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0627 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0627 Cone-Chr9:2988239 Cone16ag0870 Cone-Chr16:9177028 1.33E-109 dispersed
Cone12ag0425 Cone-Chr12:2521804 Cone9ag0627 Cone-Chr9:2988239 1.32E-178 wgd
Cone13ag0981 Cone-Chr13:8329200 Cone9ag0627 Cone-Chr9:2988239 1.15E-106 wgd
Cone19ag0973 Cone-Chr19:7376643 Cone9ag0627 Cone-Chr9:2988239 2.67E-105 wgd
Cone6ag0626 Cone-Chr6:3169346 Cone9ag0627 Cone-Chr9:2988239 3.75E-245 wgd
Cone8ag0440 Cone-Chr8:2761272 Cone9ag0627 Cone-Chr9:2988239 7.19E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83171 PF00582 Usp 1.20E-09 CL0039 Cone PK