Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0632 ATGTACTTGGAGAGAGGGGTGGGCGGTTCGAAGTCGGAGGTCGGATTCTTAGATCGGAAGCTGATTAACGAAGCTTTTGACAAGCATCTGGAACGATCTTCACCAGCTTCTTCCAGGGATATGATTAACGGAAATGAGAAGGCCATGCCGCAGGCTGGCTGCTCCAACGGGGAATCAGAAACTGACAGTGAAGCATCAGATGTTAGTGGTTCTGACGGGGATGATACATCTTGGATATCATGGTTTTGCAATCTGCGTGGAAATGAGTTCTTCTGTGAAGTGGATGACGATTACATACAAGATGATTTTAACCTTTGTGGGTTAAGCAACCAAGTTCCATATTATGATTATGCACTTGATTTGATTCTGGATGTTGAATCCTCCCATGAGGAGCAAAATGAACTCGTTGAATCTGCAGCAGAGATGCTATATGGTCTCATTCATGCTCGATACATATTGACTACCAAAGGAATTGCTGCTATGCTGGACAAGTACAAGAATTATGAATTTGGGAGATGCCCAAGAGTCAACTGCTCTGGGCAGCCATGTCTTCCTGTTGGTCAATCTGACATCCCTCGCTCAAGCACTGCCAAGATATATTGTCCTAGATGTGAAGATATTTACTACCCCCGTTCTAAGTATCAAGGTAACAACGATGGAGCCTATTTCGGCACAACATTTCCCCACCTCTTCTTGATGACTCATGGGAACCTGAAGCCCCAAAATGCATCACAGAGCTATGTTCCTAGAGTGTTTGGATTCAAGATCCACAAACCATGA 780 44.49 MYLERGVGGSKSEVGFLDRKLINEAFDKHLERSSPASSRDMINGNEKAMPQAGCSNGESETDSEASDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSNQVPYYDYALDLILDVESSHEEQNELVESAAEMLYGLIHARYILTTKGIAAMLDKYKNYEFGRCPRVNCSGQPCLPVGQSDIPRSSTAKIYCPRCEDIYYPRSKYQGNNDGAYFGTTFPHLFLMTHGNLKPQNASQSYVPRVFGFKIHKP 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3000540 3003695 - Conep09aG0064700.1 Cone9ag0632 444795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 144 165 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 191 212 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 219 236 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 94 108 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PRINTS Casein kinase II regulatory subunit family signature 77 93 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 PANTHER CASEIN KINASE II SUBUNIT BETA 58 258 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Cone9ag0632 259 MobiDBLite consensus disorder prediction 31 73 - -
Cone9ag0632 259 FunFam Casein kinase II subunit beta 170 244 - -
Cone9ag0632 259 SUPERFAMILY Casein kinase II beta subunit 75 258 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 FunFam Casein kinase II subunit beta 70 169 - -
Cone9ag0632 259 Pfam Casein kinase II regulatory subunit 77 255 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 70 169 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone9ag0632 259 MobiDBLite consensus disorder prediction 49 73 - -
Cone9ag0632 259 Gene3D - 170 244 - -
Cone9ag0632 259 SMART CK_II_beta_2 77 255 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0632 K03115 - - cit:102621387 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0421 Cone-Chr12:2506852 Cone9ag0632 Cone-Chr9:3000540 1.24E-147 wgd
Cone6ag0629 Cone-Chr6:3178446 Cone9ag0632 Cone-Chr9:3000540 8.85E-186 wgd
Cone8ag0436 Cone-Chr8:2735860 Cone9ag0632 Cone-Chr9:3000540 1.15E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84