Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0638 ATGTATGTTTATGACGGGCTGTATTTGGTTGAGAAGTGTTGGCAAGATGTGGGACCTCATGGTAAGCTTGTTTTCAAGTTTCAATTGAACAGAATTCCAGGTCAACCAGAACTTGCTTTGAAAGAAGTGAAGAAGTCCAAAAATTCAAAACTACGGAAAGGTCTCTGCATAGAAGATATTTCAAAAGGGAAAGAGGTAATGCCAATACCTGCTGTGAACACAATAGATGACGAGAAACCCCCACAATTTAAATACATAACTAGAATGATGTATCCAGATTGGTGCCGCCCTCTTTCCCTTCAGGGTTGCGATTGCATCAGTGGGTGCTCGGATTCGATGAAATGTTCTTGTGCCGTTAGGAATGGAGGACAAATCCCATTTAACCACAACGGGTCAATTGTTGAAGCAAAGCCCCTTGTTTATGAATGTAGTCGTCAATGCAAGTGTTCTTCTTCTTGCCACAATCGAGTAAGTCAGAAAGGTATCAAATTTCAGCTAGAAATTTTCAAAACCAAAGATAGAGGATGGGGTGTGAGATCTCTTGATTCTATTCCTTCTGGAAGTTTTACATGCGAGTATTTAGGAGAGCTTCTAGAAGAAACGGAAGCTGATAAAAGAACTGGAAATGATGAATATTTGTTCGATATAGGGAATAACTTCAATGACTATTCTCTATGGGATGGCCTTTCAACCCTCATACCGGAATTACAATCAAATTCTTTAGAGCTCGTTGGCGAGTGTGGGTTTACGATTGATGCAGTGGAATCTGGAAATGTGGGTAGGTTTATCAACCACAGTTGCGCTCCAAATCTTTATGCACAGAATGTCTTATACGATCACGAGGAATCGAGGATTCCGCACATAATGTTCTTTGCCGCGGAAAACATTCCCCCCTTGCAAGAACTAACTTACCATTATAATTACGTGATAGATCAGGTTCGAGATTCTGACGGGAACATAAAGAAGAAGAGTTGCTATTGCGGTTCTGTAGAGTGCACTGGCCGGTTGTACTGA 1014 41.12 MYVYDGLYLVEKCWQDVGPHGKLVFKFQLNRIPGQPELALKEVKKSKNSKLRKGLCIEDISKGKEVMPIPAVNTIDDEKPPQFKYITRMMYPDWCRPLSLQGCDCISGCSDSMKCSCAVRNGGQIPFNHNGSIVEAKPLVYECSRQCKCSSSCHNRVSQKGIKFQLEIFKTKDRGWGVRSLDSIPSGSFTCEYLGELLEETEADKRTGNDEYLFDIGNNFNDYSLWDGLSTLIPELQSNSLELVGECGFTIDAVESGNVGRFINHSCAPNLYAQNVLYDHEESRIPHIMFFAAENIPPLQELTYHYNYVIDQVRDSDGNIKKKSCYCGSVECTGRLY 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3043669 3044682 - Conep09aG0065400.1 Cone9ag0638 444801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0638 337 SMART preset_2 57 148 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone9ag0638 337 SMART set_7 164 313 IPR001214 GO:0005515(InterPro)
Cone9ag0638 337 ProSiteProfiles SET domain profile. 164 307 IPR001214 GO:0005515(InterPro)
Cone9ag0638 337 SUPERFAMILY PUA domain-like 2 63 IPR015947 -
Cone9ag0638 337 ProSiteProfiles Post-SET domain profile. 321 337 IPR003616 -
Cone9ag0638 337 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 337 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Cone9ag0638 337 Pfam SET domain 175 307 IPR001214 GO:0005515(InterPro)
Cone9ag0638 337 Pfam SAD/SRA domain 2 35 IPR003105 -
Cone9ag0638 337 ProSiteProfiles YDG domain profile. 1 31 IPR003105 -
Cone9ag0638 337 ProSiteProfiles Pre-SET domain profile. 101 161 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone9ag0638 337 SUPERFAMILY SET domain 47 313 IPR046341 -
Cone9ag0638 337 SMART PostSET_3 321 337 IPR003616 -
Cone9ag0638 337 Gene3D SET domain 53 337 IPR046341 -
Cone9ag0638 337 Pfam Pre-SET motif 61 156 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone9ag0638 337 Gene3D - 1 52 IPR036987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0638 K11420 - - mdm:108174661 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0100 Cone-Chr11:421714 Cone9ag0638 Cone-Chr9:3043669 3.51E-38 dispersed
Cone5ag0562 Cone-Chr5:2398772 Cone9ag0638 Cone-Chr9:3043669 2.65E-29 dispersed
Cone7ag0355 Cone-Chr7:1542641 Cone9ag0638 Cone-Chr9:3043669 4.12E-76 dispersed
Cone8ag0090 Cone-Chr8:479790 Cone9ag0638 Cone-Chr9:3043669 2.00E-39 dispersed
Cone6ag0634 Cone-Chr6:3210666 Cone9ag0638 Cone-Chr9:3043669 1.62E-235 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007773 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 3 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46814 PF13646 HEAT_2 5.40E-12 CL0020 Cone TR