Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0640 ATGGGTAAGCACGGGCCTTGCTATCACTGTGGAGTAACAAGCACACCCCTTTGGCGCAATGGGCCTCCAGATAAGCCAGTATTATGCAATGCTTGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCCAACTATACTCCTCTCCACGCCAGATCAGACCCTGTTGATTTCGAAGACCATAGAGTCTCCAAAATGAAAAGTGCATCTCTATACCAAAACAAGGAAGTTAATATGCTTAAAAGAAAACTGCAGCATGAAAATGGGTTATTGGCTGGAGGGATCATCCCAAATGATCATAGTCAGAATTTCCATAAGACTGTGGATGAAGACACAAGTAATCGGTCAAGTTCCGGATCTGCCATTTCCAACTCAGAAAGCTGTGCTCAATTTGGTAGTGCTGATGCTAGTGATTTAACAGGTCCAGCTCAGTCAATGGTGTGGGATACAATGGTGCCATCAAGGAAGAGAACGTGTGTGAATCGGTCAAAGCCATCTTCTGTTGAGAAACTCACAAAAGATCTATACACAATTTTACAAGAACAACAATCTTCATATTTCTCGGGATCTTCAGAAGAGGATCTTCTTTTAGAGAGTGAAGCACCAATGGTCTCTGTCGAGATTGGACATGGAAGTGTTCTCATTAGACACCCAAGCTCTATAGCTCGAGAAGAGGAGTCTGAAGCTAGCTCTCTTTCGATTGACAATAGCAGACTCTACCCCATAAATGAGTCTTATTCTTCTTATTCAGCCACTTTTCCTGTACATAGTGGAGTTGAAATTCAGAGTGGAAAGATGAAGAATCTTGCAGGCCATGGGGTGCAACAAGAGCAATGTAAAAGGGACAAATCGCAATATGAAAAAGCTCAAGTCTTGGGAAATCACAACTCGCCTCTGTGTAATATAGATCTAACTGATGTTCTTAACTTGGAAGAGTTTACGAGGCAATTGACTGATGAAGAGCAGAAACAGTTGATGAAATATCTACCTCAAATCGATGCTGTTCAACTTCCCGACAACCTCAAATGCATGTTTGAGAGTCTGCAATTCAAGGAGAACTTGACTTCCTTCCAGCAGTTGCTTGCTGAGGGGGTCTTAGATTTGTCCTCTCCAAGTGCAAAATTTGAAGACTGCAAGACTTTGAAAAGGCTTGCTTTATGCAATCTGTCGAAATCCAAGTGGGTGGAACGGTATCATATACTTAAGGAAAGTAAAAATAGTGGTGGGGCTGCTCCTGTTATGGGACCCACTTCTGTGATGTCAAGTAATTTCATGAATGCCAAGAGATTCTTCCATGACACCCAAAATAAAAATTTCTCAGATGCGAAGACTATGATGAAGAGTCCAAAAAGGGTGATGATGAAGAGTCCAAAAAGGGTGATGATGAAGGGTAGCTTGGAAAACAAGGAACTGATAGACTATGAAAGCTACTGCTTTAGTCCAAGAAGCCTATTTGCTTTGCCTTCTGATCGAAGCTCTCTGCCATTGGAATCTTTACAGTTTGTTGGAGAAAGTTCTGATCAGGATCTATTAGTTGATGTTAGGTCAAACAACTCTTTCCCTCAAGCTGAGCTTCTTCATCCAGCTAGCACTGGTAGTAGCTCAGGGTACCCGAATCTTGTTCATAACCGGTTTTGTTGA 1638 42.25 MGKHGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARSDPVDFEDHRVSKMKSASLYQNKEVNMLKRKLQHENGLLAGGIIPNDHSQNFHKTVDEDTSNRSSSGSAISNSESCAQFGSADASDLTGPAQSMVWDTMVPSRKRTCVNRSKPSSVEKLTKDLYTILQEQQSSYFSGSSEEDLLLESEAPMVSVEIGHGSVLIRHPSSIAREEESEASSLSIDNSRLYPINESYSSYSATFPVHSGVEIQSGKMKNLAGHGVQQEQCKRDKSQYEKAQVLGNHNSPLCNIDLTDVLNLEEFTRQLTDEEQKQLMKYLPQIDAVQLPDNLKCMFESLQFKENLTSFQQLLAEGVLDLSSPSAKFEDCKTLKRLALCNLSKSKWVERYHILKESKNSGGAAPVMGPTSVMSSNFMNAKRFFHDTQNKNFSDAKTMMKSPKRVMMKSPKRVMMKGSLENKELIDYESYCFSPRSLFALPSDRSSLPLESLQFVGESSDQDLLVDVRSNNSFPQAELLHPASTGSSSGYPNLVHNRFC 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3054672 3059083 - Conep09aG0065600.1 Cone9ag0640 444803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0640 545 Gene3D - 287 375 IPR038108 -
Cone9ag0640 545 MobiDBLite consensus disorder prediction 93 125 - -
Cone9ag0640 545 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 403 IPR044867 -
Cone9ag0640 545 SMART GATA_3 1 53 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0640 545 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cone9ag0640 545 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0640 545 PANTHER OSJNBB0038F03.10 PROTEIN 1 369 IPR044589 -
Cone9ag0640 545 Gene3D - 4 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone9ag0640 545 Pfam Asx homology domain 279 366 IPR028020 -
Cone9ag0640 545 CDD ZnF_GATA 6 61 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0640 545 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0412 Cone-Chr12:2429606 Cone9ag0640 Cone-Chr9:3054672 1.41E-192 wgd
Cone6ag0635 Cone-Chr6:3216648 Cone9ag0640 Cone-Chr9:3054672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46815 PF13646 HEAT_2 5.40E-12 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0640 - - - 0.0