Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0653 ATGGTAGGTCAGATTTGCAACACCACAGAGTCGGATTTGGCTCTGTTGGAATCCATTCGCCGCCAATTACTTGGCGAATCAGAAATTATTTCGGGAAAATCTCCGATGTTCTGTAGAAGCTCTAGTTTCAGTAGCTTATACCCATGCTTGACTGAAACTTGGGGTGCTTTACCTCTTAAAGAAGATGACTCAGAGGATATGGTCCTAGCCGGAGTGCTTAGAGATGCTGTTAGCGTTGGGTGGGTCCCATCACTTAATTCAAGCATGGCGGAAACATTCAGTTTCGGATTCTCCGATGTGAAGTCCGAGCCAGAAATTCTTCCTCCGGTGAATCATCGTTTTCCGGAGTATAAGGAATTAGCACAGGTTCCGGAGGCGGTTTCTGCTCCAGCAGTTGTTCCAGCAAAAGGTAAGCATTACAGAGGCGTACGGCAGCGGCCGTGGGGCAAATTCGCAGCAGAGATACGTGACCCAGCGAAGAACGGGGCCAGGGTATGGCTCGGAACTTTCGAGACTGCGGAGGATGCAGCTCTGGCTTATGACCGGGCTGCTTATAGGATGCGTGGCTCGAGGGCTCTCCTCAACTTTCCACTCCGAGTCAATTCAGGCGAACCAGAACCGGTTCGAGTAACATCAAAGCGGGCCTCGCCAAGGTCATCGCCGGAGCATTCCGAGTCATCTTCAGCACAAAGCGAGTCGCCTAAGAGGCGGAAGAAGGTTCATAGAGCGGGTCGTGAGGTGGTGGGTCAACCCGGGTTGGAAATAGGCAAAGAACTGAATGTGATAGAGGGGAAGGGAATGCAAGTTGAGAATCTAGTGGCATCGTGCACACGTGGCAATGAGTTATTGGTTAGCTAA 858 51.05 MVGQICNTTESDLALLESIRRQLLGESEIISGKSPMFCRSSSFSSLYPCLTETWGALPLKEDDSEDMVLAGVLRDAVSVGWVPSLNSSMAETFSFGFSDVKSEPEILPPVNHRFPEYKELAQVPEAVSAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRASPRSSPEHSESSSAQSESPKRRKKVHRAGREVVGQPGLEIGKELNVIEGKGMQVENLVASCTRGNELLVS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3110330 3111612 - Conep09aG0067000.1 Cone9ag0653 444816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0653 285 SMART rav1_2 139 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677(InterPro)
Cone9ag0653 285 Pfam AP2 domain 139 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 MobiDBLite consensus disorder prediction 213 228 - -
Cone9ag0653 285 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 PANTHER DNA-BINDING DOMAIN 121 232 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone9ag0653 285 Gene3D AP2/ERF domain 138 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 MobiDBLite consensus disorder prediction 203 249 - -
Cone9ag0653 285 CDD AP2 138 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0653 285 FunFam Ethylene-responsive transcription factor 2 138 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0405 Cone-Chr12:2381471 Cone9ag0653 Cone-Chr9:3110330 3.23E-50 dispersed
Cone9ag0653 Cone-Chr9:3110330 Cone9ag0983 Cone-Chr9:5033048 2.21E-29 dispersed
Cone9ag0653 Cone-Chr9:3110330 Cone9ag0654 Cone-Chr9:3117004 4.74E-30 tandem
Cone12ag0404 Cone-Chr12:2370752 Cone9ag0653 Cone-Chr9:3110330 1.85E-29 wgd
Cone14ag0493 Cone-Chr14:2425752 Cone9ag0653 Cone-Chr9:3110330 1.07E-28 wgd
Cone15ag0522 Cone-Chr15:2553295 Cone9ag0653 Cone-Chr9:3110330 2.58E-31 wgd
Cone6ag0649 Cone-Chr6:3279735 Cone9ag0653 Cone-Chr9:3110330 3.06E-170 wgd
Cone8ag0420 Cone-Chr8:2610186 Cone9ag0653 Cone-Chr9:3110330 4.59E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46816 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0653 K09286 - csv:101203663 310.071