Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0657 ATGACAGTTGAGAAAGAAGATCTTGGTTTGAGTCTGAGCTTGAATACTTTTGCGCAGAATCAAAATCATACTTTTAATCATCCTAATAATAATAATAATAATAATTTCCATCTGAATCTCATGCCTACTTCTTTGGCACCTTCCCCTTCCTGGTCTTCTTCTCCTTCTACCGGCTTCAACAACTTCCAGAAACCCTCTAACTGGAACGACCACTTCCTCTCTTCAGACCGAAACTCCGAAATGCAAACGTTCATCCGAGTCAGAGGCATCGACGTTAACCGTTTGCCATCGGTGGTCGACTGTGAAGAGGAAGCCGGAGTTTCGAGCCCTAACAGTACCGTTTCGAGTGGGAGCGGGAAGCGTAGCAGTCATGAGAGAGATGCCAATGGAGAAGATCACGAACTGGATCGGGCTTGCTCTCGTGGAATCAGCGACGAAGAAGATGGCGATACCTCCAGAAAGAAGCTCAGACTCTCCAAAGACCAATCGGCTATTCTGGAGGAGAGCTTCAAAGAGCATAACACACTTAATCCGAAGCAAAAGCTGGCGTTGGCCAAGCAATTGGGTCTCCGGCCCAGACAAGTTGAAGTCTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAAGTTGACTGCGAATTCTTGAAGCGGTGCTGTGATAATCTGACGGAGGAGAATAGGCGGTTGCAGAAGGAAGTACAGGAGCTGAGAGCACTGAAGCTATCCCCGCAGCTGTACATGCAAATGACCCCACCTACCACACTCACCATGTGCCCATCATGTGAGCTAGTAGGGGTCCCACCCTCCGCACCATCGTCGGCCATGCTGCGTCGGGCCCATCAGCATCATACTGGCCCATCCCACTCACGACCCAGTACCATCAACCCGTGGGCCTCAGCCACTCCCATTCCTCGCAGGCCGTTCGATGCAATTCACCGAGGAGGGTCGTGA 960 50.52 MTVEKEDLGLSLSLNTFAQNQNHTFNHPNNNNNNNFHLNLMPTSLAPSPSWSSSPSTGFNNFQKPSNWNDHFLSSDRNSEMQTFIRVRGIDVNRLPSVVDCEEEAGVSSPNSTVSSGSGKRSSHERDANGEDHELDRACSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCDNLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCELVGVPPSAPSSAMLRRAHQHHTGPSHSRPSTINPWASATPIPRRPFDAIHRGGS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3125555 3127489 - Conep09aG0067400.1 Cone9ag0657 444820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0657 319 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone9ag0657 319 MobiDBLite consensus disorder prediction 120 156 - -
Cone9ag0657 319 CDD homeodomain 153 210 IPR001356 GO:0003677(InterPro)
Cone9ag0657 319 Pfam Homeodomain 153 207 IPR001356 GO:0003677(InterPro)
Cone9ag0657 319 Gene3D - 157 207 - -
Cone9ag0657 319 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677(InterPro)
Cone9ag0657 319 SMART halz 209 252 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0657 319 SUPERFAMILY Homeodomain-like 142 210 IPR009057 -
Cone9ag0657 319 MobiDBLite consensus disorder prediction 101 156 - -
Cone9ag0657 319 MobiDBLite consensus disorder prediction 275 319 - -
Cone9ag0657 319 Coils Coil 208 245 - -
Cone9ag0657 319 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0657 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 282 IPR050762 -
Cone9ag0657 319 FunFam Homeobox-leucine zipper protein 18 140 214 - -
Cone9ag0657 319 SMART HOX_1 151 213 IPR001356 GO:0003677(InterPro)
Cone9ag0657 319 Pfam HD-ZIP protein N terminus 3 124 IPR006712 GO:0005634(InterPro)
Cone9ag0657 319 PRINTS Lambda-repressor HTH signature 180 189 IPR000047 GO:0003677(InterPro)
Cone9ag0657 319 PRINTS Lambda-repressor HTH signature 189 205 IPR000047 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1102 Cone-Chr20:7605619 Cone9ag0657 Cone-Chr9:3125555 1.68E-67 dispersed
Cone6ag1484 Cone-Chr6:11792840 Cone9ag0657 Cone-Chr9:3125555 1.53E-54 dispersed
Cone7ag1311 Cone-Chr7:9619411 Cone9ag0657 Cone-Chr9:3125555 5.24E-45 dispersed
Cone8ag0182 Cone-Chr8:956996 Cone9ag0657 Cone-Chr9:3125555 8.69E-50 dispersed
Cone9ag0657 Cone-Chr9:3125555 Cone9ag1406 Cone-Chr9:10475756 9.94E-55 dispersed
Cone11ag0552 Cone-Chr11:3091504 Cone9ag0657 Cone-Chr9:3125555 1.52E-77 wgd
Cone6ag0654 Cone-Chr6:3299663 Cone9ag0657 Cone-Chr9:3125555 3.90E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46818 PF07842 GCFC 9.60E-29 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0657 K09338 - vvi:100246436 387.111