Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0679 ATGAATAAATCAAAGGAAATTGATCGAGACATAATTGTTAAAGAAGGGGGTGGATCACTACCACTCGATGAAGCATCCTCATCATCTGCTTCAAACAAGTCTCATGTGATCAGTTCTGCGAAGAAGATCACTAAAACTCTTCACCCTCCCATCGAAACTCAGTGGCATCTTCCATCTCAGAAACACAAACCGGCATCGACAAAATCCGGATTGAAGTCGATGTTTTCTTATCCACTCAAAGTTCATGGCTCGTTAAAGAAGTTCAGAAAGAGCAGATCAACCTTGCCGGTAGTGCTTTATGATCAAGAACCTCATGATCCGAAAGACAAACAAGTCGTCGATTCTTTCTACGAATTGCTCAAGCTTGAGGGCCAATTGTCCACGAAACACACTGACTATCACACCCTTCTTCGATTTCTTAGAATGAGAGACTATGATCTCGAGAAAGCCAAGGCGGTGTTTTTGAATTATCTCAAGTGGCGGGAAGAGTTTAGGGTCGATGCAATCTCAAAGGAATTTAAATTTGAGGAATATGGTGATGTGAAGAAATGTTATCCACATGGATTTCATGGGGTAGATAGGTACGGGCGACCCGTATACATAGAAAGGATCGGGATGGTCGACCTCAATAAGCTATTACAAGTAACTACTCTTGAGCGGTTGGTGAAACATCATGTGTCGGAACAAGAGAAGACCTTAAACTTGAGATATCCGGCTTGTTCGATTCAAACTAAGAAGCACATTGCATCTACTACCAGCATTTTGGATGTGAGGGGAGTGGGGATGGCTAATTTTTCGAGTCCGGCTCGATATCTCTTTACGGAAATTCAGAAGATTGACAGCAATTTCTACCCAGAGACGCTACATCGGCTATTTATCATCAATGCCGGATCGGCATTTAAAATTCTGTGGAAAACAGTCAAGGCCTTTCTTGATGCTCGCACTTTGGCTAAGATTCAAGTGCTCGGATACAACTATAGTAATGAACTTCTTCAAGCTATCGATCCAAGTAATTTGCCGACTTTCTTGGGCGGAAATTGCACGTGTTTGGAGTATGGTGGTTGCTTCCTAAGTGACCAAGGACCCTGGCATGATCCCGAAATACTCGAAATGCTTCAGGCACTCTCTCAAACAGACGATTTGGATGATGATGATGATGGAAAAAACAGAGGTGATGCTTTAAGAGATTCCACAATTTCCACTTTTCGGATTGACAAAATCCAGGCATTGGAAGCAGCTCTAAGAGAGACTAAAACTAAAATCGAGATGTTGGAAGCTGCACTTGAGGTCACCAAAACAATTGTTGAAGAACTTGCCCAGAATCTCCAAGAGCTAACAACTTCTTCGGAAGTCAGCTAA 1359 42.46 MNKSKEIDRDIIVKEGGGSLPLDEASSSSASNKSHVISSAKKITKTLHPPIETQWHLPSQKHKPASTKSGLKSMFSYPLKVHGSLKKFRKSRSTLPVVLYDQEPHDPKDKQVVDSFYELLKLEGQLSTKHTDYHTLLRFLRMRDYDLEKAKAVFLNYLKWREEFRVDAISKEFKFEEYGDVKKCYPHGFHGVDRYGRPVYIERIGMVDLNKLLQVTTLERLVKHHVSEQEKTLNLRYPACSIQTKKHIASTTSILDVRGVGMANFSSPARYLFTEIQKIDSNFYPETLHRLFIINAGSAFKILWKTVKAFLDARTLAKIQVLGYNYSNELLQAIDPSNLPTFLGGNCTCLEYGGCFLSDQGPWHDPEILEMLQALSQTDDLDDDDDGKNRGDALRDSTISTFRIDKIQALEAALRETKTKIEMLEAALEVTKTIVEELAQNLQELTTSSEVS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3237934 3240252 + Conep09aG0069600.1 Cone9ag0679 444842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0679 452 SUPERFAMILY CRAL/TRIO domain 176 371 IPR036865 -
Cone9ag0679 452 CDD SEC14 175 346 IPR001251 -
Cone9ag0679 452 MobiDBLite consensus disorder prediction 1 38 - -
Cone9ag0679 452 Pfam CRAL/TRIO domain 185 345 IPR001251 -
Cone9ag0679 452 Gene3D - 165 376 IPR036865 -
Cone9ag0679 452 Coils Coil 407 448 - -
Cone9ag0679 452 SMART CRAL_TRIO_N_2 132 157 IPR011074 -
Cone9ag0679 452 MobiDBLite consensus disorder prediction 22 38 - -
Cone9ag0679 452 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 177 351 IPR001251 -
Cone9ag0679 452 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 66 443 IPR051026 -
Cone9ag0679 452 Gene3D - 100 164 - -
Cone9ag0679 452 PRINTS Cellular retinaldehyde-binding protein signature 135 157 - -
Cone9ag0679 452 PRINTS Cellular retinaldehyde-binding protein signature 304 323 - -
Cone9ag0679 452 PRINTS Cellular retinaldehyde-binding protein signature 337 346 - -
Cone9ag0679 452 SUPERFAMILY CRAL/TRIO N-terminal domain 105 172 IPR036273 -
Cone9ag0679 452 SMART sec14_4 177 348 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0679 K26544 - - mdm:103440576 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0807 Cone-Chr8:8126927 Cone9ag0679 Cone-Chr9:3237934 1.81E-13 dispersed
Cone8ag1210 Cone-Chr8:10270462 Cone9ag0679 Cone-Chr9:3237934 1.76E-98 dispersed
Cone8ag1211 Cone-Chr8:10274433 Cone9ag0679 Cone-Chr9:3237934 4.14E-101 dispersed
Cone9ag0679 Cone-Chr9:3237934 Cone9ag1544 Cone-Chr9:11220343 4.56E-13 dispersed
Cone6ag0671 Cone-Chr6:3415198 Cone9ag0679 Cone-Chr9:3237934 2.07E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009123 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 33