Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0698 ATGTCATCTTCATCCTCTTCTCCTTCTGCTCCCACCTTGTCCCAACTGGACCACCACCACCTCCCTCCACCTCCCACCGAGCAGCTCTGTTATGTCCATTGCACCATCTGTGACACCGTCCTTGCTGTGAGCGTGCCTTGCAGCAGCTTGTTCAAGACCGTGACTGTGCGTTGCGGCCACTGCTCCAACTTACTTCCGGTGAACATGCGTGGTCTTCTTCTGCCTTCTCCAACTAATCAATTTCACCCGCTTGGCCACTCTAATTTCTTCTCTCCTGATTCGCAAAACCTCCTGGAAGATCAGTATATGATCCCAAACTCAGTAGTGCCGAACTTTCTGTTGAACCAGATGACTGCAAATAATTTCACAATGCCGCCTCGTGGAGGAGTAGCTGATCATCATCACGGGCTCCCGCGATCACCTCCAGTCATAAACAGACCTCCGGAGAAAAGACAGCGAGTTCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGGCTGTGAATCCCGATATATCCCACAGAGAAGCTTTTAGCGCCGCAGCTAAGAATTGGGCTCACTTCCCACACATTCACTTTGGTCTCATGCCTGACCAGGCTGCTGCCAAGAAGACAACTATGCTCCAGGAAGGAGAAGACGGTATGCTTATGAGGGATGGTTTTTTCAATTCAGCCAATCATTTGGGTATCTCCCCCATTAATTAG 717 50.35 MSSSSSSPSAPTLSQLDHHHLPPPPTEQLCYVHCTICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPVNMRGLLLPSPTNQFHPLGHSNFFSPDSQNLLEDQYMIPNSVVPNFLLNQMTANNFTMPPRGGVADHHHGLPRSPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQAAAKKTTMLQEGEDGMLMRDGFFNSANHLGISPIN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3356189 3358563 - Conep09aG0071500.1 Cone9ag0698 444861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0698 238 MobiDBLite consensus disorder prediction 132 152 - -
Cone9ag0698 238 CDD HMG-box_SF 153 189 - -
Cone9ag0698 238 Pfam YABBY protein 25 199 IPR006780 GO:0007275(InterPro)
Cone9ag0698 238 FunFam Axial regulator YABBY 144 216 - -
Cone9ag0698 238 PANTHER PROTEIN YABBY 6-RELATED 26 207 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone9ag0698 238 Gene3D High mobility group box domain 144 214 IPR036910 -
Cone9ag0698 238 SUPERFAMILY HMG-box 138 192 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0628 Cone-Chr7:3163738 Cone9ag0698 Cone-Chr9:3356189 1.04E-30 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone9ag0698 Cone-Chr9:3356189 1.45E-94 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone9ag0698 Cone-Chr9:3356189 9.96E-153 wgd
Cone8ag0386 Cone-Chr8:2354763 Cone9ag0698 Cone-Chr9:3356189 1.63E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46824 PF00201 UDPGT 9.30E-15 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0698 K25796 - mdm:103437137 319.316