Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0713 ATGGCGGTTGTCAGAACCAGCACGAACTCGATCCTACGAATTCTGCAACCACGTCTGTCATTTCCCTTTCCAGCTTCATCTCCACACCGTTTAGCATTTAACTTCGTCAGTATCAGTTCCGGCCGTATTCGGTGCGCCGCATCTGACTCCAGGGACTGCGGCGGCAAGGTATCTTCTCGGCTCTCCCAAGTTCAGCAACTGATAAGAGCGGCAGAGGACCGTGCTCTGTCTTATGACAATGAGCCCGCCCCTAAAATCACCCTTGATCATGTGACTGTGGGTTTTGCAAGAAGTGGTGGGCCTGGGGGTCAGAACGTTAACAAAGTGAACACAAAGGTTGACATGCGCTTTAATGTTGGAAGTGCGTATTGGCTAAATGACAGGATCAGGGAGAAGATTATCCAAATGGAGAAGAATCGGATCAACAAGGATGGGGAACTAGTGATCTCTTCCACAAAGACAAGAACTCAGAAGGGTAACATTGAGGATGCCTTGGCAAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCACCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCGAAGATGGCTGCAATTGGGGAGCAGAAACGCCTTCAAAGCAAGAAGGTGCTTTCAAATAAAAAGGCATTTAGAAGAAGTCGAGACAGTTGGGATTGA 669 47.68 MAVVRTSTNSILRILQPRLSFPFPASSPHRLAFNFVSISSGRIRCAASDSRDCGGKVSSRLSQVQQLIRAAEDRALSYDNEPAPKITLDHVTVGFARSGGPGGQNVNKVNTKVDMRFNVGSAYWLNDRIREKIIQMEKNRINKDGELVISSTKTRTQKGNIEDALAKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLQSKKVLSNKKAFRRSRDSWD 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3416653 3419024 - Conep09aG0073000.1 Cone9ag0713 444876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0713 222 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 97 113 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
Cone9ag0713 222 MobiDBLite consensus disorder prediction 202 222 - -
Cone9ag0713 222 Coils Coil 61 81 - -
Cone9ag0713 222 Gene3D - 80 220 - -
Cone9ag0713 222 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 83 176 - -
Cone9ag0713 222 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 1 222 - -
Cone9ag0713 222 FunFam Peptidyl-tRNA hydrolase ICT1 80 219 - -
Cone9ag0713 222 Pfam RF-1 domain 85 208 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0713 K15033 - - mdm:103408295 325.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0712 Cone-Chr6:3586400 Cone9ag0713 Cone-Chr9:3416653 2.60E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g480 . . . . . Bpe07g00148 . . . Cmo16g01089 . . . . . Cpe14g00861 . . . . . . . . Cla10g00299 Cam10g0312 Cec10g0322 Cco10g0315 Clacu10g0309 Cmu10g1148 Cre10g0558 . . Cone6ag0712 Cone9ag0713 Lsi07g01344 . . Cme06g02631 . . . . . . . Bma12g00141 . . . . Cma16g01041 . Car16g00992 . . . . . . . . . . . . . . . . . Csa03g00319 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011191 1 0 0 5 1 0 1 1 1 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 3 2 1 31