Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0724 | ATGGAGGGAAGGGAAGGTGGAATAAGCAGTGGGGTTACAGTGGTGGGATCAGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACAGAAAACCCAGTCCAGACAGCCGGATCAGCGTCGCCGCCGCATCCTGGAGCACTAGTGATTGCACCACCTACGTCGGCGGCGTCTACGGTGCCGGGAAAGAAGAAGAGGGGGAGACCGAGAAAGTATGGGCCTGACGGCCCAGTTAAATCAGCCCTGTCTCCCAAACCCATATCGTCCTCCGTGCCTCCGCCCATGATCGACTTCTCGGCCCAGAAGCGAGGAAAAGTCCGGCCGGCGAGCTCAGTGAGCAAAACCAAGTATGAAGTGGAGAATTTAGGTGAATGGGTTCCTTGTTCTGTTGGTGCTAATTTCACCCCTCATATCATCACTGTCAATGCCGGAGAGGATGTTACAATGAAGATCATATCTTTTTCTCAACAAGGCCATCGAGCCATATGCATACTCTCAGCCAATGGCGTCATCTCAAGCGTTACCCTCCGTCAACCCGATTCGTCTGGAGGAACATTGACTTACGAGGGCCGTTTTGAAATATTATCCTTATCTGGGTCATTCATGCCAAGTGATAGTGGTGGAACTAGGAGCCGGTCTGGTGGAATGAGCGTCTCTTTAGCAAGCCCAGATGGACGAGTCGTAGGTGGTGGAGTAGCCGGTCTTTTAGTCGCTGCAAGTCCAATACAGATTGTGGTGGGCAGTTTTCTGTCTGGAAACCAACACGAGCAGAAACCGAAGAAACAGAAACATGACATCCTATCTACAACTGCCATGCCAACTGCTGCTGTTCCGATATCGACTGCTGATCCCAAGTTCAGTATAACAACTTCGTCTTCTTTCCGAGGGGATAGTTGGTCTTCATTGCCGCTGGATTCAAGGAGTAACCCAACTGATATTAATGTGTCTTTACCGGCTGACTAA | 960 | 51.04 | MEGREGGISSGVTVVGSDAPSDYHVAPRTENPVQTAGSASPPHPGALVIAPPTSAASTVPGKKKRGRPRKYGPDGPVKSALSPKPISSSVPPPMIDFSAQKRGKVRPASSVSKTKYEVENLGEWVPCSVGANFTPHIITVNAGEDVTMKIISFSQQGHRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPIQIVVGSFLSGNQHEQKPKKQKHDILSTTAMPTAAVPISTADPKFSITTSSSFRGDSWSSLPLDSRSNPTDINVSLPAD | 319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3455326 | 3458139 | - | Conep09aG0074100.1 | Cone9ag0724 | 444887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0724 | 319 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 135 | 248 | IPR005175 | - | |
| Cone9ag0724 | 319 | Gene3D | - | 135 | 270 | - | - | |
| Cone9ag0724 | 319 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 17 | 288 | IPR039605 | GO:0003680(InterPro) | |
| Cone9ag0724 | 319 | MobiDBLite | consensus disorder prediction | 290 | 319 | - | - | |
| Cone9ag0724 | 319 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
| Cone9ag0724 | 319 | ProSiteProfiles | PPC domain profile profile. | 130 | 269 | IPR005175 | - | |
| Cone9ag0724 | 319 | CDD | DUF296 | 134 | 225 | IPR005175 | - | |
| Cone9ag0724 | 319 | FunFam | AT-hook motif nuclear-localized protein 1-like | 135 | 265 | - | - | |
| Cone9ag0724 | 319 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 132 | 254 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0188 | Cone-Chr10:922961 | Cone9ag0724 | Cone-Chr9:3455326 | 2.48E-62 | dispersed | |
| Cone18ag1088 | Cone-Chr18:7983114 | Cone9ag0724 | Cone-Chr9:3455326 | 1.58E-67 | dispersed | |
| Cone1ag0517 | Cone-Chr1:5066141 | Cone9ag0724 | Cone-Chr9:3455326 | 1.75E-09 | dispersed | |
| Cone3ag0199 | Cone-Chr3:1032642 | Cone9ag0724 | Cone-Chr9:3455326 | 1.94E-61 | dispersed | |
| Cone8ag0357 | Cone-Chr8:2067946 | Cone9ag0724 | Cone-Chr9:3455326 | 8.13E-169 | dispersed | |
| Cone8ag0467 | Cone-Chr8:3054867 | Cone9ag0724 | Cone-Chr9:3455326 | 9.48E-53 | dispersed | |
| Cone9ag0724 | Cone-Chr9:3455326 | Cone9ag0727 | Cone-Chr9:3470444 | 5.37E-22 | proximal | |
| Cone15ag0865 | Cone-Chr15:6575646 | Cone9ag0724 | Cone-Chr9:3455326 | 1.59E-91 | transposed | |
| Cone12ag0347 | Cone-Chr12:1886783 | Cone9ag0724 | Cone-Chr9:3455326 | 2.29E-22 | wgd | |
| Cone14ag0306 | Cone-Chr14:1406920 | Cone9ag0724 | Cone-Chr9:3455326 | 6.33E-90 | wgd | |
| Cone14ag0141 | Cone-Chr14:683830 | Cone9ag0724 | Cone-Chr9:3455326 | 2.00E-21 | wgd | |
| Cone15ag0149 | Cone-Chr15:720428 | Cone9ag0724 | Cone-Chr9:3455326 | 4.95E-21 | wgd | |
| Cone18ag1132 | Cone-Chr18:8173667 | Cone9ag0724 | Cone-Chr9:3455326 | 1.41E-20 | wgd | |
| Cone6ag0720 | Cone-Chr6:3625087 | Cone9ag0724 | Cone-Chr9:3455326 | 5.99E-215 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0724 | - | - | - | 0.0 |