Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0727 ATGGATGACCGTAATTCTCTTCCCCCTACTTTTCACACTAGAGATTTCCAGCTACTGCAGCAACAACATCAATTCCATCACCAGCACCCAACCGATAGCAACGATAGCGGCCACGAAGATCATGATCAAGGCAGCAAAGACTTCATTCTGGGCCTCACCGGAGGTGGTACCAATTCCGATGGATCCGAATCGACCAGAAGGCCTAGAGGCCGGCCCGCCGGATCCAAGAACAAGCCCAGAGCACCCATTATCATCAGCCGAGATAGCGCCAATGCTCTGCGCACCCACGTCATTGAGGTCACGGATGGCTGTGATGTCGTTGAGAGTGTCTCGACGTTCGCGCGGTCCCGCCAACGTGGCGTGTGCATAATGAGCGGAACCGGAACAGTTACAAACGTGACGCTGAGGCAACCAGCATCACCAGGTGCAGTTGTGACATTACAAGGGAGGTTTGAGATCTTGTCGCTGGCAGGTTCATTTTTGCCGCCCCCTGCCCCACCTGCGGCGACAGGGTTGACTATTTATCTAGCAGGCGGACAAGGGCAAGTGGTGGGAGGGAGTGTGGTGGGAATACTAAATGCGTCGGGTCCGGTAATTATCATGGCAGCTTCGTTTAGTAATGCGGCTTATGAAAGGCTGCCTTTGGAGGAGGATGAGGGTCAAGTACTTGCAATGCAAGTAGGAGGAGGTGGTTCGATTGGATCGCCCGGCGGTGGAGTCGGTCAACAACCACCTCAGCAACAGCAGTTATTGGGAGAGGAAAATTTAGGGATGTTTCATCAAGCTGGAATAGCTCCGAATCTTCTCAATTCGATTCAATTGCCGGCGGAGGGTTATTGGGCAGCTGGTCGACCTCCATTCGAGTTATAA 870 53.1 MDDRNSLPPTFHTRDFQLLQQQHQFHHQHPTDSNDSGHEDHDQGSKDFILGLTGGGTNSDGSESTRRPRGRPAGSKNKPRAPIIISRDSANALRTHVIEVTDGCDVVESVSTFARSRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLQGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGILNASGPVIIMAASFSNAAYERLPLEEDEGQVLAMQVGGGGSIGSPGGGVGQQPPQQQQLLGEENLGMFHQAGIAPNLLNSIQLPAEGYWAAGRPPFEL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3470444 3471313 + Conep09aG0074400.1 Cone9ag0727 444890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0727 289 CDD DUF296 94 161 IPR005175 -
Cone9ag0727 289 MobiDBLite consensus disorder prediction 28 46 - -
Cone9ag0727 289 Gene3D - 93 227 - -
Cone9ag0727 289 FunFam AT-hook motif nuclear-localized protein 93 220 - -
Cone9ag0727 289 MobiDBLite consensus disorder prediction 10 27 - -
Cone9ag0727 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 206 IPR005175 -
Cone9ag0727 289 ProSiteProfiles PPC domain profile profile. 90 226 IPR005175 -
Cone9ag0727 289 PIRSF ESCAROLA 9 287 IPR014476 GO:0003680(InterPro)
Cone9ag0727 289 MobiDBLite consensus disorder prediction 1 83 - -
Cone9ag0727 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 286 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone9ag0727 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0347 Cone-Chr12:1886783 Cone9ag0727 Cone-Chr9:3470444 1.09E-114 dispersed
Cone5ag0246 Cone-Chr5:1041605 Cone9ag0727 Cone-Chr9:3470444 8.63E-72 dispersed
Cone8ag0353 Cone-Chr8:2019529 Cone9ag0727 Cone-Chr9:3470444 4.04E-117 dispersed
Cone8ag0466 Cone-Chr8:3052220 Cone9ag0727 Cone-Chr9:3470444 2.40E-75 dispersed
Cone9ag0727 Cone-Chr9:3470444 Cone9ag1543 Cone-Chr9:11218034 2.74E-71 dispersed
Cone9ag0724 Cone-Chr9:3455326 Cone9ag0727 Cone-Chr9:3470444 5.37E-22 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0727 - - - 0.0