Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0728 ATGACGGAGATGGGATCGAACCAGAACGATGGCACAAGCTACCAGCCGTCGGAGTCGAAGCCGTGCGAGAACAACTGCGGCTTCTTCGGTTCTGCAGGAACGAAGAACCTCTGCTCCAAGTGCTACAGAGACGTTCTGATCCAAGAAGAACAAGCGGCTCTAGCCAGATCCGCTATGGAAAAATCAATAAGTTTTCCTCCTAAATCGAAACCGAAGCCTTTCGAATTCGGTCGAAAGGCTCCTAATCATAAACTACTTGCGGCGCTTTCAGCTACTAGTTCCACGGATAATAAGATCTTCAACTTTGCCCCCTTCTCCGCCTCTTCCTCCGCCGCCGGTCCGTCGAAGATGCTGTTTGGCTACTGTGGGGATGGGTCAGAGGCGCCTCCTAGGGTTCCGAACCGGTGCTGGAGCTGTAACAAGAAGGTAGGGCTGAACGGGTTTAGCTGCAGGTGCGGTAAAACCTTCTGTGGGACACACCGGCATGCAGAGAAGCATGATTGCACGTTTGACTTCAAAAAGTCTGGACGCCAAGAGATTGCCAAGGCCAATCCTCTGGTCAAGTCCGATAAGCTCCAGAGATTCTGA 588 52.21 MTEMGSNQNDGTSYQPSESKPCENNCGFFGSAGTKNLCSKCYRDVLIQEEQAALARSAMEKSISFPPKSKPKPFEFGRKAPNHKLLAALSATSSTDNKIFNFAPFSASSSAAGPSKMLFGYCGDGSEAPPRVPNRCWSCNKKVGLNGFSCRCGKTFCGTHRHAEKHDCTFDFKKSGRQEIAKANPLVKSDKLQRF 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3471824 3472606 - Conep09aG0074500.1 Cone9ag0728 444891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0728 195 Pfam AN1-like Zinc finger 137 172 IPR000058 GO:0008270(InterPro)
Cone9ag0728 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 194 IPR050652 GO:0043161(PANTHER)
Cone9ag0728 195 SMART AN1_Zf_4 136 173 IPR000058 GO:0008270(InterPro)
Cone9ag0728 195 SUPERFAMILY AN1-like Zinc finger 126 190 IPR035896 -
Cone9ag0728 195 ProSiteProfiles Zinc finger AN1-type profile. 130 176 IPR000058 GO:0008270(InterPro)
Cone9ag0728 195 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone9ag0728 195 FunFam Zinc finger AN1-type containing 6 121 191 - -
Cone9ag0728 195 Gene3D - 4 67 - -
Cone9ag0728 195 SMART A20_3 19 43 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone9ag0728 195 Pfam A20-like zinc finger 21 43 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone9ag0728 195 MobiDBLite consensus disorder prediction 1 22 - -
Cone9ag0728 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 66 - -
Cone9ag0728 195 Gene3D - 123 191 IPR035896 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0728 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1466 Cone-Chr5:9705002 Cone9ag0728 Cone-Chr9:3471824 5.78E-37 dispersed
Cone9ag0728 Cone-Chr9:3471824 Cone13ag1190 Cone-Chr13:9240133 2.19E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0728 . Csa05g00359 . . . . . . . . . . . . . . . . . . Cpe13g00197 Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 Lsi09g00363 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39