Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0737 ATGGTAGCTGCCGTTGGCATTAGGGTTGAGAGCTTATCGAGAAGCGGGATTCAATCGATCCCGAAAGAGTACGTGAGACCTAAAGAAGAGAGAATTAGCATCTACGATGTTTTCGCAGAGGAGAAAAGAGAAGAAGGGACTCAAGTCCCCACCATTGATTTGAACACCATTGATAGTGAGGACAAGTTGGTGAGGGAGAAATGTCATGAGGAGTTGAAGAAGGCTGCTATGGAATGGGGTGTGATGCACCTTATCAACCATGGAATCCCTGATGAGCTCACTGATAGCGTTAAGAATGCCGGTCAAGCGTTTTTCAATCTTCCTGTTGACGAGAAGGAGAAGCATGCTAGCGATCGGGATCGGAAGGGCTCGGGTTGTATTCAAGGGTACGGCAGTAAATTGGCTGATAATGCTAGCGGGAAGCTTGAATGGGAGGATTATTTCTTCCACCTTGTTTATCCTGAGGATAAACGTGATTTGTCCCTATGGCCTAAGTCTCCCTCTGAATATATCAAGGTGACGAGTGAGTATGCGAGGCAGCTCAGAGGTCTAGTGACCAAAATCCTCTCAATCCTATCCCTTGGACTGGGACTTGAAGAAGGAAGGCTAGAGAAAGAAGTAGGAGGGCTTGAAGAGCTTCTTCTCCAAATGAAAATCAACTACTACCCTAAATGCCCTCAACCAGAACTAGCCTTAGGAGTTGAAGCTCACACCGATATTTCTGCTCTCACCTTCATCCTCCACAACATGGTCCCTGGTCTACAACTTTTCCACGAGGGAAAATGGGTCATCGCCAAATGTGTTCCGAATTCCATTATCATGCACATTGGAGACACCCTTGAGATCCTAAGCAATGGTAAATACAAGAGTATTCTTCATAGAGGGTTGGTTAATAAGGAGAAAGTTAGGGTCTCTTGGGCCGTTTTCTGTGAGCCGCCGATGGAGAGGATCGTACTCAAGCCGTTGCCTGAGTTGGTTTCCGAGACGGACCCACCGCTCTTCCCTCCACGCACCTTTGCTCAGCATCTTCAGCATAAGTTATTTAAGGAGAGCCAGACACAACTTCCTCAAGGAGATTTAGATATTACATAA 1092 46.52 MVAAVGIRVESLSRSGIQSIPKEYVRPKEERISIYDVFAEEKREEGTQVPTIDLNTIDSEDKLVREKCHEELKKAAMEWGVMHLINHGIPDELTDSVKNAGQAFFNLPVDEKEKHASDRDRKGSGCIQGYGSKLADNASGKLEWEDYFFHLVYPEDKRDLSLWPKSPSEYIKVTSEYARQLRGLVTKILSILSLGLGLEEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDISALTFILHNMVPGLQLFHEGKWVIAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKVRVSWAVFCEPPMERIVLKPLPELVSETDPPLFPPRTFAQHLQHKLFKESQTQLPQGDLDIT 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3510433 3511636 - Conep09aG0075400.1 Cone9ag0737 444900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0737 363 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 213 312 IPR005123 -
Cone9ag0737 363 FunFam Flavonol synthase 4 350 - -
Cone9ag0737 363 Pfam 2OG-Fe(II) oxygenase superfamily 217 312 IPR044861 -
Cone9ag0737 363 Pfam non-haem dioxygenase in morphine synthesis N-terminal 49 165 IPR026992 -
Cone9ag0737 363 SUPERFAMILY Clavaminate synthase-like 8 349 - -
Cone9ag0737 363 Gene3D - 5 355 IPR027443 -
Cone9ag0737 363 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 22 342 IPR050295 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0737 K05277 - - vvi:100233142 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0703 Cone-Chr8:7086520 Cone9ag0737 Cone-Chr9:3510433 2.06E-51 dispersed
Cone8ag1015 Cone-Chr8:9438323 Cone9ag0737 Cone-Chr9:3510433 4.25E-51 dispersed
Cone9ag0737 Cone-Chr9:3510433 Cone9ag0930 Cone-Chr9:4566832 1.23E-54 dispersed
Cone1ag1118 Cone-Chr1:55545965 Cone9ag0737 Cone-Chr9:3510433 1.68E-39 wgd
Cone12ag0336 Cone-Chr12:1845101 Cone9ag0737 Cone-Chr9:3510433 3.56E-24 wgd
Cone14ag0128 Cone-Chr14:591608 Cone9ag0737 Cone-Chr9:3510433 3.08E-38 wgd
Cone15ag0135 Cone-Chr15:630026 Cone9ag0737 Cone-Chr9:3510433 1.85E-37 wgd
Cone5ag0827 Cone-Chr5:3548300 Cone9ag0737 Cone-Chr9:3510433 1.50E-37 wgd
Cone8ag0343 Cone-Chr8:1961632 Cone9ag0737 Cone-Chr9:3510433 8.42E-198 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g429 Blo02g01083 . . Bda08g00547 . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . Cone8ag0343 . . Cone9ag0737 . . . . . . . . . . . . . . . . Cma16g00499 . Car16g01149 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015062 2 0 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 13