Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0738 ATGCAGGCAAAAGAAATTACATACATTCTCTTTATAACTAGGCATTGTAAAAGAGGCTATCTAGCTAAACCAATGGCTTCTTCCTACTTTCATTCATGTAGTTTCAGCTTCTTATTGATGCCGTTGATGATAGCGGCGTACATGGCCAAGTCATCGCTCGCCATATACCGACCGAGCTCATGGCTCCTTGCTCACGCTACCTTTTACGGAGACGAGACTGCCTCGGAAACTATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTGTAAATGGATATGGAACAGATACTGCAGCATTGAGCTCAACACTGTTCAACAACGGTTACGCATGTGGAACATGTTACCAGATAAAATGTTACCAATCTCCACATTGCTTCACTAGCGTGTCTTTCACGACGGTCACCGCGACAAACCTTTGTCCCCCGAACTGGGCCCAAGATTCGAACGCAGGAGGGTGGTGCAACCCGCCTAGGACTCACTTCGACATGGCCAAACCCGCTTTCATGAAAATTGCTAACTGGAAAGCTGGCATCATCCCCGTTCTCTACCGCAGGGTACCATGCATAAGACGAGGTGGGCTTAGATTCACTTTCCAAGGAAATGGGTACTGGCTACTAGTGTATGTGATGAATGTAGGAGGAGCAGGTGACGTGTCTGGGATGTGGGTGAAAGGAAGCAAGACAGGTTGGATCAAGATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTGCAGTGCTTGGTGGCCAATCTCTTTCTTTTAGGATCACATGTTACACGACTAGGCAGACTGTTACAGCTTGGAATGTTGCTCCTTACAATTGGAATGTCGGGTTGACTTATCAAACTAATGTCAACTTCCGTTGA 864 46.53 MQAKEITYILFITRHCKRGYLAKPMASSYFHSCSFSFLLMPLMIAAYMAKSSLAIYRPSSWLLAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSPHCFTSVSFTTVTATNLCPPNWAQDSNAGGWCNPPRTHFDMAKPAFMKIANWKAGIIPVLYRRVPCIRRGGLRFTFQGNGYWLLVYVMNVGGAGDVSGMWVKGSKTGWIKMSHNWGASYQAFAVLGGQSLSFRITCYTTRQTVTAWNVAPYNWNVGLTYQTNVNFR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3513641 3514994 + Conep09aG0075500.1 Cone9ag0738 444901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0738 287 Pfam Lytic transglycolase 96 182 IPR009009 -
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 100 118 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 268 282 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Cone9ag0738 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 79 192 IPR007112 -
Cone9ag0738 287 SUPERFAMILY Barwin-like endoglucanases 60 210 IPR036908 -
Cone9ag0738 287 Gene3D - 46 187 IPR036908 -
Cone9ag0738 287 SMART dpbb_1 96 182 IPR007112 -
Cone9ag0738 287 CDD DPBB_EXPA_N 61 187 - -
Cone9ag0738 287 PANTHER EXPANSIN-A15 44 282 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 167 180 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 91 105 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 150 167 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 191 203 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 131 141 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 PRINTS Expansin signature 238 259 IPR002963 GO:0009664(InterPro)
Cone9ag0738 287 Gene3D - 193 287 IPR036749 -
Cone9ag0738 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 282 IPR007117 -
Cone9ag0738 287 SUPERFAMILY PHL pollen allergen 189 281 IPR036749 -
Cone9ag0738 287 Pfam Expansin C-terminal domain 194 271 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0581 Cone-Chr9:2741577 Cone9ag0738 Cone-Chr9:3513641 2.47E-87 dispersed
Cone12ag0334 Cone-Chr12:1836858 Cone9ag0738 Cone-Chr9:3513641 2.09E-155 wgd
Cone6ag0734 Cone-Chr6:3709224 Cone9ag0738 Cone-Chr9:3513641 2.21E-190 wgd
Cone8ag0340 Cone-Chr8:1951447 Cone9ag0738 Cone-Chr9:3513641 1.71E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0738 - - - 0.0