Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0742 ATGCAAGAACCCGGCGGCTCCGGAATACTGATGGCGTCGGCAGGTGGAAACAATAGCGGAGGCGGCGGCGAGGTGGTGGTAGGAGATCAGTACCTTCAACATCATCATCATAATCACAATGATGATCATCAGGCACGGCACCTCAAGGCGGAGATAGCGACGCACCCGCTGTACGAGCAGCTTCTGGTGGCACACGTGGCATGCTTGCGTGTTGCAACACCGATCGATCAGCTGCCGCTGATCGACGCACAGTTAACTCAGTCGCACCATATTCTTCGGTCCTACGCCTCTTATCAGCATCAGCAAGCTCCTCTCCTCTCCCACTATGAACGCCAAGAACTCGACAACTTCTTGGCGCAGTATCTAATAGTTCTGTGCACATTCAAAGAACAGCTTCAGCAACATGTTAGAGTCCATGCGGTTGAAGCTGTCATGGCCTGTCGTGAAATTGAAACTACATTACAGGCTCTCACTGGAGCAAGTTTGGGTGAAGGAACGGGTGCTACAATGTCAGACGATGAGGAAGACGACATGCATATGGATCTGTGCTTAGATCAGTCTGCTTCTGATGGGCATGACATGATGGGATTTGGACCGCTTCTTCCTACTGAAGCTGAAAGGTCTTTGATGGAAAGGGTTCGACAAGAATTGAAGATTGAGCTCAAGCAGGGATTCAGATCAAGAATAGAAGATGTGAGGGAAGAAATATTAAGGAAGAGAAGGGCAGGGAAGTTGCCGGGGGACACAACCACTGTCTTGAAAAATTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGACAAGGCCAAACTAGTGGAGGAGACAGGGTTGCAGCTCAAACAAATAAACAATTGGTTCATAAACCAAAGGAAGAGAAATTGGCACAGCAATTCTCAATCCCTCACCTCTTTGAAATCCAAGCGCAAGAGATAA 942 48.73 MQEPGGSGILMASAGGNNSGGGGEVVVGDQYLQHHHHNHNDDHQARHLKAEIATHPLYEQLLVAHVACLRVATPIDQLPLIDAQLTQSHHILRSYASYQHQQAPLLSHYERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACREIETTLQALTGASLGEGTGATMSDDEEDDMHMDLCLDQSASDGHDMMGFGPLLPTEAERSLMERVRQELKIELKQGFRSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSLTSLKSKRKR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3527506 3530565 + Conep09aG0075900.1 Cone9ag0742 444905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0742 313 SMART KNOX2_2 104 159 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone9ag0742 313 Pfam KNOX2 domain 108 158 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone9ag0742 313 SMART HOX_1 238 303 IPR001356 GO:0003677(InterPro)
Cone9ag0742 313 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0742 313 SUPERFAMILY Homeodomain-like 238 303 IPR009057 -
Cone9ag0742 313 CDD homeodomain 239 300 IPR001356 GO:0003677(InterPro)
Cone9ag0742 313 Gene3D - 235 308 - -
Cone9ag0742 313 FunFam homeobox protein knotted-1-like 3 isoform X1 237 298 - -
Cone9ag0742 313 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677(InterPro)
Cone9ag0742 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 299 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone9ag0742 313 Pfam KNOX1 domain 48 89 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone9ag0742 313 SMART KNOX1_2 46 90 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone9ag0742 313 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0998 Cone-Chr17:7678344 Cone9ag0742 Cone-Chr9:3527506 1.42E-119 dispersed
Cone20ag0339 Cone-Chr20:1520759 Cone9ag0742 Cone-Chr9:3527506 1.74E-117 dispersed
Cone4ag1764 Cone-Chr4:12938180 Cone9ag0742 Cone-Chr9:3527506 4.36E-126 dispersed
Cone7ag1682 Cone-Chr7:11259269 Cone9ag0742 Cone-Chr9:3527506 2.10E-126 dispersed
Cone6ag0737 Cone-Chr6:3726221 Cone9ag0742 Cone-Chr9:3527506 3.84E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46827 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0742 - - - 0.0