Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0744 ATGTCGTTTCAAGATAAGGATATGGATCAAGACGACGACGGAGGTGCCTCCGATATCAGCAGCAGCGCCGGCGACCTTGAAGAAGATGACCACCTGACCACAACTGAAATAAACAATAACGACGTCGCTTCAGATGAAGCGAATTTTGATCGTCGGACTGCGTTTCAAGCTACCCCATTGAAAGAGGAGCCCGTTTATTCGGACCCACAATCTGACCCGGAACAAAAGACCCGTTTTCCACCCGTCGGGGCTGTATCCGTCGCGATGCAGATGCGTATGCCAATGACCGTACCTGCGACCCGTAGATCCACCAAGGACCGCCACACCAAGGTCGAAGGTCGTGGTCGAAGGATCCGAATACCCGCAACGTGTGCGGCCCGGGTCTTTCAGCTTACCCGAGAGCTCGGCCACAAATCCGACGGTGAAACCGTCCGGTGGCTCCTCGAACACGCCGAGCATGCTATTATTGAAGCCACCGGCACTGGAACTGTTCCGGCCATCGCAGTCTCCGTCGGTGGGACACTCAAAATCCCCACCACCTCAAACACCGACAACAACACACTTAATAACTCAGAAAACAACTCCTCCACGAAGAAACGGAAACGACCATCGAACTCTGAGTTTGTCGACCTTAGTGACGCCGTTTCGAAGTCGTCCGGTTTAGCTCTGGTTCGAACCGCATCTCCAACTTCTAATTCTATCCCGCAAGGTCTCGTTCCCCTCTGGGCCGTAAACAACCCCGGCATGATGGTACCAGCCAACCCCGTCTGGATGATCCCGCCGGCGACAACCCAAGTCGTCGGAACTGGATCAGAAAACCAGCAACCGCAAATATGGGCGTTGTCGCCGATGCTAACGCCGGTGTTCAACGTCGCGGCGGCTAGACCTATATCGTCGTTCGTAGCAAATCAACCGGTTGGTTTAGAGATTGGATCTTCTCCGATGACGCTGGTGAGTACCAACAGCTTGTCTAGCTCAGCGGTGGGAGCGAAGGTGGCGAAGAAGTCTTCGTCGACGATGGCGGCGCCGACTGGGAGTTCAGGTGGTAGTAGGACTCAAATGCTAAGGGATTTTTCGTTGGAGATTTATGATAGGCAGGAGTTGCAGTTCATGGGTAGTAAGATTAATGGCAGTAACCAACAGACACAATCCTCGAAGCCGTAA 1164 53.61 MSFQDKDMDQDDDGGASDISSSAGDLEEDDHLTTTEINNNDVASDEANFDRRTAFQATPLKEEPVYSDPQSDPEQKTRFPPVGAVSVAMQMRMPMTVPATRRSTKDRHTKVEGRGRRIRIPATCAARVFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVSVGGTLKIPTTSNTDNNTLNNSENNSSTKKRKRPSNSEFVDLSDAVSKSSGLALVRTASPTSNSIPQGLVPLWAVNNPGMMVPANPVWMIPPATTQVVGTGSENQQPQIWALSPMLTPVFNVAAARPISSFVANQPVGLEIGSSPMTLVSTNSLSSSAVGAKVAKKSSSTMAAPTGSSGGSRTQMLRDFSLEIYDRQELQFMGSKINGSNQQTQSSKP 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3534491 3536064 - Conep09aG0076100.1 Cone9ag0744 444907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0744 387 MobiDBLite consensus disorder prediction 333 353 - -
Cone9ag0744 387 MobiDBLite consensus disorder prediction 177 194 - -
Cone9ag0744 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 90 336 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone9ag0744 387 Pfam TCP family transcription factor 103 203 IPR017887 -
Cone9ag0744 387 MobiDBLite consensus disorder prediction 1 80 - -
Cone9ag0744 387 ProSiteProfiles TCP domain profile. 104 158 IPR017887 -
Cone9ag0744 387 MobiDBLite consensus disorder prediction 177 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0744 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0348 Cone-Chr15:1623578 Cone9ag0744 Cone-Chr9:3534491 2.27E-64 dispersed
Cone14ag0318 Cone-Chr14:1501325 Cone9ag0744 Cone-Chr9:3534491 1.66E-68 wgd
Cone6ag0740 Cone-Chr6:3733009 Cone9ag0744 Cone-Chr9:3534491 1.26E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46828 PF00149 Metallophos 5.80E-16 CL0163 Cone TF