Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0748 ATGGATCCCATGGGAGATGATCAATACAGGGAGCAACATGCTCCATCTGGTGTCTTGACTAGCATCAGTTTCTGTGTTTCAACACAGACAGATATAGAGAAGATGTCTGTTATGGAAATCAATGTAGCTAGTGAGATCACCGATCCTCGGTTGGGATTCCCAAATCCTTCATCTCGTTGCTCTACATGTGGAGCTAAATCTTATAAGCATTGTGAAGGTCACTTTGGGGTTGTCAAATTTCCATTCACTGTACTTAATCCGTATCATCTTTCGGAAATTGCACAAATTTTGAATAAAGTTTGTCCAGCTTGTAAATCAATCAAGCGGGACATTAGGGTCAAGGGTGCAGATTTGAATTCTATTAATCCTAACCGACCCAAGGGCTGCAAATATTGTGCTTTAAGGTCAGATGAGTGGTATCCGATCCCGAAGTTTAAGGTTTCCACCTCTGATATTTTTCAAAGAAGCGTCATCATTGCAGAGGTAAAGGGAAAGTTTCCGGTCAAGCTTCTAAAAAAAAATAGAAGTGAAGTCTTGCCTGATGACTATTGGGATTTTATTCCGAAAGATTTACAAGAAGATGAAAGCCAGAATAGACCGACCAGAAGGGTACTATCACATACTCAGGTTCGTTCCTTGTTAAAAGGTATTGATGAAAAGTTTGTCAGGAATTTTGTTCCCAGCACAGCTTCACTGTTCCTCAACAGTTTCCCCATAACGCCAAATTCTCATCGCGTGACAGAAATCACTCATTCCTTTTCTAATGGACAACGATTAATATTTGATCAAAGGACAAAGGCTTACAAGAAGCTGCTATTGAGAGAGACAGCTAACCAGTTGAGTACTCATGTTATAGACTGTTTGAAAATTTCCAAGCTTGCCCCAGAGAAGTCGATAAGTCAAGATTTGGCCTCAGCCCATCAAAACAAAATTGATACTGCCACTACCTCATCTGGGTTGAGATGGGTTAAGGATGTTGTTCTTGCAAAGCGGAGCGATCATTGTTTCCGCATGGTAGTTGTAGGAAACCCCAACATTAAGATCAATGAGATAGGTATTCCCAATTATGTTGCAGAGAGAATGCAAGTTCTGGAACATTTAAACACCCTAAACATGAAGAATTTGGGCAGTGCTTGCTTTCTACGTCTTGTTGAAAAGGGAGAGATTTATGTACGAAGAGAAGGCCATTCGGTTCGTGTACGTCATGTCGATGGGCTTCACAAAGGAGACACAATTTTTAGGCCTTTGATGGATGGAGATATTGTGATGGTAAATAGGCCTCCTTCTATCCATCAACATTCCCTGATAGGTTTATCTGCTAAGATCCTTCCAGTGAGATCTGTACTTTCTCTTAACCCTCTCTGTTGTTCTCCTTTTCGTGGTGATTTTGATGGTGATTGCCTACATGGGTATGTTCCTCAATCGGTAGAGACCCGGGTTGAGTTAAGGGAGCTTGTGGCCCTTGATAGGCAGTTGATAAATGAACAAAGTGGCCATAATCTTCTTTCCCTTAGCCATGACAGTTTGACTGCTGCTCATTTGGTTACGGAAGATGGGGTCCATTTAAACCTTTTTCAAATGCAACAACTACAAATGTTTTGTTTGCATCAAATGCCATCACCAGCAATTGTCAAGTCTTCGTCAGTTCATGGTTGTTTTTGGACCGGCAAACAGTTGTTTAGTATGTTGTTGCCGCGGGATTTCGATTACAGTACTAATGGTGTATGTATTGAAAAGGGGGAGCTTATATCTTCAGAGGGATCTTTTTGGCTTCGTGATTCAAATGACAACCTTTTTCAAAACCTAGTACAACATTGTGGGGGACATACTCTTGACATATTGCATGCTGCCCAAGAACTTCTTTGTGAATGGCTTCAAATGAGGGGATTAAGTGTTTCAGTTTCTGATTTATACCTCTCATGTGATTTGAAGTCACGCAAAAACTTGATCAATGAAGTCTACTATGGTTTACAAGATGCGGAGCATACATGTAACATAAAACAATTGATGGTAGATTCTTTGCGAGATTTTCTTAGTGGAGTTGAGGACGATGATGTGATTAATGATTCTTTTGACGCGGAACGGTTATGTTGCGAGAAACAAAAATCTGTCACTCTTAGTCAAACATCTATTGATACTTTTAAGCAAGTTTTCAAGGATGTTCAGAATTTAGTCCACAAATATGCGGATAAAGATAATTCATTTATCACAATGTTTAAGGCTGGAAGCAAGGGCAATTTATTGAGAATAGTTCAACATGGAATGTGTCTGGGATTGCAACATTCCCTTGTACCATTGAAATTTAAGATGCCGCACCAGCTCTCCTGTTCTGCTTGGAATGACCAAAAGACACGTGATTTGATCAAGAAAGAACCTGAATTCTCCGAGTCTTATATTCCATGTGCTGTTGTAGAAAATTCGTTTCTTACGGGTCTGAATCCTCTGGAATGTTTTGTTCATTCAGTGACAAGTCGGGATAGTTCTTTTAGTGACAATGCTGATCTTCCTGGGACTTTGAGCAGGAGAATAATGTTTTTCTTGCGTGATATCTGCACTGCTTACGATGGGACAGTTAGGAACGCATATGGAAATCAGCTTGTTCATTTCTGTTGTGGAGATGATTCGGGTCTGTCTAGTTCAAACAGGATTCCTAGTCGTGTGAATGCTGATGCTCTTAGTTCCATAGCTGGACAACCTGTTGGTTCATTGGCCGCTTGTGCCATATCTGAAGCTGCATATGGTGCGTTAGATCAACCTATAAGTCTACTTCAAGCTTCTCCATTGCTAAATCTAAAGAATGTACTGGAATGTGGCACAAAGAGGAACAAAAAAGATCAAACCTTTGCACTATTTTTATCGAAGAAACTTGCAAAGCGCAGATACGGTTTTGAGTATGGAGCTTTAGAAGTTAAGCACCATTTGGAGAAAGTTATATTTGAAGACATTGTCTCATCCGTTATGATCATCTTCTCTCCAGAGAACTATACGAAGCAAAATGTTAGTCCATGGACTTGCCATTTCCATGTCAGCAAGGAACTTATAAAGAGAAGAAGACTGAGATTGCATTCCATCATTGATTCCCTTCAGAAAAGGTGTAACCATGCCCGGACCCAGAAAAGAATCAACCTTCCCATTTTGCAAATATCAGCAAAGAGTTGTCCTTTGACTAGCTCAAAGAAAGAGGATAATGCCTCATTTTGCATAACTGTCACTATATCTTCCAACTCCAAACCCAATTTGGATTCCGCTAGGGATTTGGTGATTCCTTACCTTCTTCAAACTGTTATAAAAGGATTCCTAGAGATCAGTAAGGTGGATATTTTATGGAGAGATGATCAGCCCAAATTCTCAAAACCTTATTATGGTTCTTCCGGTGAGCTGTACGTGAAAGTGGCTATGTCTGGAGACTGTAAAAGATTAAGACTGTGGGCTGTTCTCATGAATCATTGTCTCCGTGTAATGGATATGATCGATTGGTCACGTAGTCATCCAGATAACATTTACGATTTCTGTATGGCTTTTGGTATAGACTCGGGTCTGAAGTATTTTTTCGATAGTTTGGCGTCTGCAATATCTGACACTGGAAAAACTATCCGTCCCGAGCACTTGGTTCTTGCTGCAGATTCGCTTTCAGTGACAGGAGAGTTTGTTGGGTTAAACTCAAAAGGACTAGCACAACAAAGAGAACATGCTTCTGTCAAGTCGCCGTTCATGCAAGCTAGCTTTTCCACTCCAGGTGCACACTTTGTCAAAGCTGCTAAGGGTGGATTTGTAGATGATCTACTGGGGACCATAGATGCACTTGCATGGGGCAAGACTCCTTCTTTAGGGACTGGTGGCAATTTCGATTTACTGTACTCAGGAAAGGGGCATGAGATTGAGAAATCTGTTGACGTCTATGGCCTACTGGGCAGTCAAATTGTCTCCCGTAAGCCACCTCCAGATATTGAATCACCTGAGCATGAAGATATTTATGACGAATTTGCTGCTCAGTTATTACCTAGAAATGGCTTCAAGGAACCAAAATATCTGGACTCAAAATCAATACTAAGAAAGTTCTTGACAGTGGATCTTGTTTGGAAGCTGTCTAGGAAATGGAAGACCATACTACATCAGTATGGCATCAACGATAGGTTAAGTGATCTTGACAGAGCAACCTTGATCAACGCCTTGCATTTTCATCCTCACTATGACGAAAAGATAGGCCCTGGAACTGTAGCAATAAAGGTTGGACAACATCCCAAGTATAAGAATACGCGCTGTTTTATATTGATACGAGAAGATGGGTCAGAGGAAGATTTTTCGTACCACAAGTGTGTCCTTGGTGCACTTGAGATTGTCGCCCCAGAAAGGGCAAAAAGCTATAGGTCAAAGCGGTTACATGAAAGTGTAGCCTAA 4398 40.84 MDPMGDDQYREQHAPSGVLTSISFCVSTQTDIEKMSVMEINVASEITDPRLGFPNPSSRCSTCGAKSYKHCEGHFGVVKFPFTVLNPYHLSEIAQILNKVCPACKSIKRDIRVKGADLNSINPNRPKGCKYCALRSDEWYPIPKFKVSTSDIFQRSVIIAEVKGKFPVKLLKKNRSEVLPDDYWDFIPKDLQEDESQNRPTRRVLSHTQVRSLLKGIDEKFVRNFVPSTASLFLNSFPITPNSHRVTEITHSFSNGQRLIFDQRTKAYKKLLLRETANQLSTHVIDCLKISKLAPEKSISQDLASAHQNKIDTATTSSGLRWVKDVVLAKRSDHCFRMVVVGNPNIKINEIGIPNYVAERMQVLEHLNTLNMKNLGSACFLRLVEKGEIYVRREGHSVRVRHVDGLHKGDTIFRPLMDGDIVMVNRPPSIHQHSLIGLSAKILPVRSVLSLNPLCCSPFRGDFDGDCLHGYVPQSVETRVELRELVALDRQLINEQSGHNLLSLSHDSLTAAHLVTEDGVHLNLFQMQQLQMFCLHQMPSPAIVKSSSVHGCFWTGKQLFSMLLPRDFDYSTNGVCIEKGELISSEGSFWLRDSNDNLFQNLVQHCGGHTLDILHAAQELLCEWLQMRGLSVSVSDLYLSCDLKSRKNLINEVYYGLQDAEHTCNIKQLMVDSLRDFLSGVEDDDVINDSFDAERLCCEKQKSVTLSQTSIDTFKQVFKDVQNLVHKYADKDNSFITMFKAGSKGNLLRIVQHGMCLGLQHSLVPLKFKMPHQLSCSAWNDQKTRDLIKKEPEFSESYIPCAVVENSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLSRRIMFFLRDICTAYDGTVRNAYGNQLVHFCCGDDSGLSSSNRIPSRVNADALSSIAGQPVGSLAACAISEAAYGALDQPISLLQASPLLNLKNVLECGTKRNKKDQTFALFLSKKLAKRRYGFEYGALEVKHHLEKVIFEDIVSSVMIIFSPENYTKQNVSPWTCHFHVSKELIKRRRLRLHSIIDSLQKRCNHARTQKRINLPILQISAKSCPLTSSKKEDNASFCITVTISSNSKPNLDSARDLVIPYLLQTVIKGFLEISKVDILWRDDQPKFSKPYYGSSGELYVKVAMSGDCKRLRLWAVLMNHCLRVMDMIDWSRSHPDNIYDFCMAFGIDSGLKYFFDSLASAISDTGKTIRPEHLVLAADSLSVTGEFVGLNSKGLAQQREHASVKSPFMQASFSTPGAHFVKAAKGGFVDDLLGTIDALAWGKTPSLGTGGNFDLLYSGKGHEIEKSVDVYGLLGSQIVSRKPPPDIESPEHEDIYDEFAAQLLPRNGFKEPKYLDSKSILRKFLTVDLVWKLSRKWKTILHQYGINDRLSDLDRATLINALHFHPHYDEKIGPGTVAIKVGQHPKYKNTRCFILIREDGSEEDFSYHKCVLGALEIVAPERAKSYRSKRLHESVA 1465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3553475 3560609 - Conep09aG0076500.1 Cone9ag0748 444911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0748 1465 Gene3D - 1359 1442 - -
Cone9ag0748 1465 Pfam RNA polymerase Rpb1, domain 3 491 637 IPR007066 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone9ag0748 1465 Gene3D RNA polymerase ii 362 414 - -
Cone9ag0748 1465 Pfam Protein of unknown function (DUF3223) 1367 1440 - -
Cone9ag0748 1465 Gene3D RNA polymerase II, clamp domain 7 117 IPR044893 -
Cone9ag0748 1465 SMART rpolaneu7 230 516 IPR006592 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone9ag0748 1465 CDD RNAP_IV_RPD1_N 27 859 IPR040403 -
Cone9ag0748 1465 Pfam RNA polymerase Rpb1, domain 4 703 761 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone9ag0748 1465 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 13 1286 - -
Cone9ag0748 1465 Gene3D RNA polymerase Rpb1, domain 3 496 640 IPR042102 -
Cone9ag0748 1465 PANTHER DNA-DIRECTED RNA POLYMERASE 16 1286 IPR045867 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)
Cone9ag0748 1465 Gene3D - 326 495 - -
Cone9ag0748 1465 Gene3D - 660 812 IPR038120 -
Cone9ag0748 1465 Pfam RNA polymerase Rpb1, domain 2 330 486 IPR000722 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0748 K16250 - - csv:101214578 1848.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0171 Cone-Chr16:1087585 Cone9ag0748 Cone-Chr9:3553475 7.25E-09 dispersed
Cone5ag0486 Cone-Chr5:2042262 Cone9ag0748 Cone-Chr9:3553475 4.72E-101 transposed
Cone6ag0744 Cone-Chr6:3760052 Cone9ag0748 Cone-Chr9:3553475 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40