Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0749 ATGGAGATTTTCAACCAACTATCCTACCCGTTTCCAGTCGGGTCCTCATCCACATCCATTTTCGAATCATCCTCAATATCCTATGCTACTACGAGCACCATCGCCGCCGCTGCAGCTACCCGTAGATCATCCCATTCCGATGAGGAGGTTATACTAGCATCTAGCCGGCCGAAAAGGCGCTCAGGGAGGAGGGTGTTCAAGGAGACAAGGCATCCAGTTTACAGAGGTGTCAGGAGAAGGAAAAACAACAAATGGGTTTGTGAATTACGAGAACCGAACAAGAAGACTCGGATTTGGCTCGGGACTTACCCAAATGCTGAGATGGCGGCTCGGGCACATGACGTGGCGGCATTGGCTTTTCGGGGAAAGTTGGCTTGTCTTAATTTTGCGGCCTCAGCTTGGAAATTGCAACTCCCGGTGTCTACGGATGCTAAGGATATTAGGGTGGCGGCTGCTAAGGCGGCAGAGGAGTTTCGTGATGAGGAAATTGGTGGCGATGACATGACGGAGACAGTTATGGATGAGGGGGAAAATTCAGGTTCAGGTGATGGGTTCTGGTATTTGGATGAAGAGGCTGTGTTTGATATGCCAAGGTTACTATCCAGCATGGCAGAAGGGCTGCTGCTTTCTCCACCATGTTTTAGTGCGGAGGAAAACTTCAATTCAGATGATGTGGAAAATGATGCTGACGTGTCACTGTGGAGCTTCTCTATTTGA 717 49.51 MEIFNQLSYPFPVGSSSTSIFESSSISYATTSTIAAAAATRRSSHSDEEVILASSRPKRRSGRRVFKETRHPVYRGVRRRKNNKWVCELREPNKKTRIWLGTYPNAEMAARAHDVAALAFRGKLACLNFAASAWKLQLPVSTDAKDIRVAAAKAAEEFRDEEIGGDDMTETVMDEGENSGSGDGFWYLDEEAVFDMPRLLSSMAEGLLLSPPCFSAEENFNSDDVENDADVSLWSFSI 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3572793 3573793 - Conep09aG0076600.1 Cone9ag0749 444912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0749 238 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 Pfam AP2 domain 72 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 SMART rav1_2 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 32 236 IPR045277 GO:0003700(InterPro)
Cone9ag0749 238 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 CDD AP2 74 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Cone9ag0749 238 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0749 238 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0662 Cone-Chr9:3150302 Cone9ag0749 Cone-Chr9:3572793 7.66E-23 dispersed
Cone9ag0749 Cone-Chr9:3572793 Cone7ag1360 Cone-Chr7:9870629 1.06E-14 dispersed
Cone9ag0749 Cone-Chr9:3572793 Cone9ag0750 Cone-Chr9:3581215 9.10E-120 tandem
Cone14ag0113 Cone-Chr14:525640 Cone9ag0749 Cone-Chr9:3572793 4.74E-72 wgd
Cone15ag0118 Cone-Chr15:569337 Cone9ag0749 Cone-Chr9:3572793 1.15E-70 wgd
Cone6ag0745 Cone-Chr6:3780101 Cone9ag0749 Cone-Chr9:3572793 1.64E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46829 PF12796 Ank_2 2.00E-15 CL0465 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0749 - - - 0.0