Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0758 ATGGAAAGAGCAACCAGGTGGTTTCGAGGGCTTTTGGGCTTGAAAAAACCAGACCGGACAACAGTATCTCCGACCGCCGTTCCGCCTAAGGACAAGCGACGGTGGAGCTTTGTCAAATCCTCTAGACAGAAATATCGAAACCGTCATCATAACCACCACCACCACCACCACGGCAGTGTTCAAACCACCGATCAGCTAACGCAGCCCTCGTTCGTGAACGACGTGGATCCCAACAAGCATGCGATTGCAGTGGCAGCAACGACGGCTGCTCAGGCGGCCGCTGCGGTTGTGAGGTTGACCACCAGCGGGAGAATCGTAAATCCAACGACGACGTTGTTTAGTGATGGAAGCGTTGCGCTTTGTGAAGAGTGGGCTGCTGTTAAGATACAAGCGGCATTTAGGGGATGCCTGGCGAGGAAGGCGTTACGAGCTCTAAAAGGATTGGTCAGGCTTCAAGCACTAGTAAGAGGTCACATTGAGAGGAAGCGAACAGCAGAGTGGCTAAACCGCATGCAGAGTTTATTCAGAGCCCAGATCCGAGCTCGGGCTGGGGGGTCCCAGGCTCCGGAGATTTCAAATTCAAGCAGCAACAGTAACAAATCTTCCCTCTTCCTTTCAATTAGTTTCGGCTCAAGGTCAAAGGAAGGGATTCGAGTCAATCACCAGTCATGGAACCAACAAGGGTCTTCTTCTATAAGCACAGGAACAATAGACGAAGAAAGGAGCGATAAAATCCTCGGAATTGACACGGGAAAACATCAACATCACCTCATACGAGATAAAACAAACAGCTTCACTACAACTGCTACTACTACTTCCAAGGACTCACTACCTTACCAGACAGTTCCAAGCTCATCTTGTGAACTCCACTCGATTAGCTTGTTCAATGCACATGGAGAGGATGAAGAAGAGTCTTCTTTCTGCACAGCTGATAATAGCCCGCAATTCTATTCGGCCAACTCAAGAAGAGAGAATAGTGATGCTAAGAGAAGTCCTTTCAGTACTCCTACCAAGAGCGACGGATTCAGAAACTATTTGAGTGGCTACCCGGATTATCCAAGTTATATGGCTTATACTAAATCTTCCAGGGCTAAGTTAAGGTCTCTTAGTGCACCGAGACAGAGGCCTCAGATCGAGAGGTCTGGTTCGGCCAAGAGAGGTTCCATTCATTGCTCGGGTGAATTGAGGTTGAGTGTCCAGAGGGTTTCTGCTTTGCAAGCAAATTTTACGAGCAAGGCTTATCCCGGGTCTGGTCGGTTGGATAAGCTTGGTATGCCTTAG 1281 48.95 MERATRWFRGLLGLKKPDRTTVSPTAVPPKDKRRWSFVKSSRQKYRNRHHNHHHHHHGSVQTTDQLTQPSFVNDVDPNKHAIAVAATTAAQAAAAVVRLTTSGRIVNPTTTLFSDGSVALCEEWAAVKIQAAFRGCLARKALRALKGLVRLQALVRGHIERKRTAEWLNRMQSLFRAQIRARAGGSQAPEISNSSSNSNKSSLFLSISFGSRSKEGIRVNHQSWNQQGSSSISTGTIDEERSDKILGIDTGKHQHHLIRDKTNSFTTTATTTSKDSLPYQTVPSSSCELHSISLFNAHGEDEEESSFCTADNSPQFYSANSRRENSDAKRSPFSTPTKSDGFRNYLSGYPDYPSYMAYTKSSRAKLRSLSAPRQRPQIERSGSAKRGSIHCSGELRLSVQRVSALQANFTSKAYPGSGRLDKLGMP 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3628198 3631611 + Conep09aG0077500.1 Cone9ag0758 444921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0758 426 SMART iq_5 144 165 IPR000048 GO:0005515(InterPro)
Cone9ag0758 426 SMART iq_5 121 143 IPR000048 GO:0005515(InterPro)
Cone9ag0758 426 MobiDBLite consensus disorder prediction 308 322 - -
Cone9ag0758 426 ProSiteProfiles IQ motif profile. 146 173 - -
Cone9ag0758 426 MobiDBLite consensus disorder prediction 305 340 - -
Cone9ag0758 426 Gene3D - 122 172 - -
Cone9ag0758 426 ProSiteProfiles IQ motif profile. 122 150 - -
Cone9ag0758 426 Pfam Protein of unknown function (DUF4005) 314 397 IPR025064 -
Cone9ag0758 426 MobiDBLite consensus disorder prediction 366 389 - -
Cone9ag0758 426 MobiDBLite consensus disorder prediction 18 65 - -
Cone9ag0758 426 MobiDBLite consensus disorder prediction 39 57 - -
Cone9ag0758 426 PANTHER IQ-DOMAIN 5-RELATED 6 382 - -
Cone9ag0758 426 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515(InterPro)
Cone9ag0758 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 167 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0758 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0869 Cone-Chr14:5568598 Cone9ag0758 Cone-Chr9:3628198 2.95E-24 dispersed
Cone7ag0718 Cone-Chr7:4218271 Cone9ag0758 Cone-Chr9:3628198 5.30E-21 dispersed
Cone1ag1144 Cone-Chr1:55664299 Cone9ag0758 Cone-Chr9:3628198 2.51E-33 wgd
Cone14ag0105 Cone-Chr14:490625 Cone9ag0758 Cone-Chr9:3628198 1.50E-25 wgd
Cone15ag0109 Cone-Chr15:526548 Cone9ag0758 Cone-Chr9:3628198 1.70E-24 wgd
Cone5ag0852 Cone-Chr5:3645032 Cone9ag0758 Cone-Chr9:3628198 8.29E-33 wgd
Cone6ag0754 Cone-Chr6:3835983 Cone9ag0758 Cone-Chr9:3628198 1.03E-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g375 . . Bda06g00076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37