Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0760 ATGGCCTCTACAAGGTCGCTGAATCGATCGTCTGAAGACATTACCAATACAACGACGCCGCTGTTAGGGACTTCAAGTGGCTCTTCCGATGAAACTAGTTCAGGCCGTCGATTCGTTCAGAGGCAGAGCCTCCGTCAGGCCGCGCGGTTCCTTAGGCAAGCGAGCAGCCGGAGGATGATGCGTGAGCCGTCGATGGTGGTGAGAGAGGCTGCGGCGGAGCAATTAGAGGAGAGGCAGAGCGATTGGGCGTATTCCAAGCCTGTTGTGATTCTCGATATCGTTTGGAACTTCGCGTTTGTGGTTGTGGCAGCTACCGTGTTGGTTCTGAGTCGCAATGAGTCGCCGGATATGCCGTTGAGGCTTTGGATTCTGGGATACGCTCTACAGTGTATTCTTCATATGGTTTGTGTTTGTGTTGAGTATCGCCGGCGGCACCACCGTGGTCCCACGTTCAATTCGCCGGAGGGAGGAAATGAGGCAGGTAGGAATTCAGGTGTGGGCTCGAATGAAGACCCGGGGCAGTATGTATCATTGGGACAATTGGATGAGGAGGGGGCGAATGGCAGTGTGGCTAAGCATCTTGAATCTGCAAACACAATGTTTTCTTTTATCTGGTGGATCATCGGATTCTACTGGGTATCTGCCGGAGGTGAATCCTTAGGACTCACCTCCCCGCAGCTCTACTGGCTATGTATAATTTTCCTTGGTTTTGATGTTTTCTTTGTCGTCTTCTGTGTTGCCCTGGCATGTATCATTGGCATAGCTGTTTGCTGTTGCCTTCCTTGTATAATTGCACTTCTATATGCTGTAGCTGATCAGGAAGGAGCGTCCAAAGAAGAAATTGAACAGCTGTCAAAATATAAGTTTAGAAAAGTGGGCGATTCTGAGAAGGTTTCAAGTGATGATCAAGAACCTGCAGGAGGAATAATGACTGAATGTGGTGGCAACAAGGATTCGTTCACTGAACATGTCCTCTCTCAGGATGATGCTGAATGCTGTATATGCCTTTCTGCTTATGATGATGGAGTTGAGCTACGACAGCTACCTTGTGGTCATCATTTTCATTGCACTTGTGTTGACAAGTGGCTCTACATTAATGCGACCTGCCCTCTCTGCAAGTACAACATTTTAAAGAGCAGCAACCATGGTCAAGAGGAAGTTTAA 1164 48.54 MASTRSLNRSSEDITNTTTPLLGTSSGSSDETSSGRRFVQRQSLRQAARFLRQASSRRMMREPSMVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPDMPLRLWILGYALQCILHMVCVCVEYRRRHHRGPTFNSPEGGNEAGRNSGVGSNEDPGQYVSLGQLDEEGANGSVAKHLESANTMFSFIWWIIGFYWVSAGGESLGLTSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEEIEQLSKYKFRKVGDSEKVSSDDQEPAGGIMTECGGNKDSFTEHVLSQDDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSSNHGQEEV 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3637166 3639726 + Conep09aG0077700.1 Cone9ag0760 444923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0760 387 CDD RING-H2_RNF6-like 331 373 - -
Cone9ag0760 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Cone9ag0760 387 SUPERFAMILY RING/U-box 322 379 - -
Cone9ag0760 387 SMART ring_2 332 372 IPR001841 -
Cone9ag0760 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 382 IPR013083 -
Cone9ag0760 387 PANTHER TARGET OF ERK KINASE MPK-1 44 377 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone9ag0760 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Cone9ag0760 387 Pfam Ring finger domain 331 373 IPR001841 -
Cone9ag0760 387 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0731 Cone-Chr19:6018946 Cone9ag0760 Cone-Chr9:3637166 9.46E-118 dispersed
Cone7ag1732 Cone-Chr7:11469243 Cone9ag0760 Cone-Chr9:3637166 2.99E-42 dispersed
Cone8ag0244 Cone-Chr8:1399617 Cone9ag0760 Cone-Chr9:3637166 2.29E-09 dispersed
Cone9ag0760 Cone-Chr9:3637166 Cone9ag0888 Cone-Chr9:4333137 3.99E-10 dispersed
Cone11ag0409 Cone-Chr11:2027383 Cone9ag0760 Cone-Chr9:3637166 1.42E-25 wgd
Cone18ag1101 Cone-Chr18:8039895 Cone9ag0760 Cone-Chr9:3637166 3.12E-151 wgd
Cone6ag0756 Cone-Chr6:3844159 Cone9ag0760 Cone-Chr9:3637166 5.65E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0760 - - - 0.0