Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0768 ATGAAATCTCTCGTTTCATTTCAGCTCTTCTTCTGTCTGATTTCGAAGCTTCTGTTTGTGGCTGCTTCTGATTCGTTCGCATCTGATGAAGTATCGGTGCTTACAACCTTCAAGGAAGGAATTTATGAAGATCCCCATCTAGTTTTTTCCAACTGGAATTACTTAGCTGCAGATCCTTGTGATTGGTCTGGAATTTCTTGTTCTCCAGATGGAGGTCATGTTGTGAAGCTTAACATTTCTTGGGCATCTTTGAAAGGATTTCTTGCTCCAGAATTGGGTCAGTTGCACTTCTTGCAAGAATTACTCTTGCATGGGAACGGTCTGATTGGAGTAATACCCAAGGAAATTGGCTTATTAAAGAACCTCAGAGTCTTGGATCTGGGAGGAAATCTGCTCTCTGGTTTGATTCCTCCAGAAATTGGGAATTTGACCAATATTATGAAAATAAACTTGGAATCTAATGGTTTGACTGGTAGATTACCTCTTGAGCTTGGGAATTTGATGTATCTTGAGGAACTTAGGTTGGATAGGAATAAGCTTCAAGGAACCTTTCCGTCTAATGGAAATTCAAACTTTACAGCTAACGATCATGGAATGTATGCCTCAAGCACAAATTTAGCTGGCTTCTGTCGCTTATCTCAACTAAAACTCGTGGATTTTTCTTACAATTTTTTTGTTGGGATAATACCTAAGTGCTTGGAGAATCTTCCGAGATTAAGTTTTCAAGGGAATTGCCTCCACATCAATGATACCGAACAGCGAACTGCCATGCAATGTGGTGGGGCCTCACCTGCTACAAGTCCTCGAGGAACCAACGTCAAATCACACAGATCTGCCGAATCCAAGCATCAATCAACATCCAAACCTGCCTGGCTCTTGGCCCTCGAAATAGTGACTGGAACCATGGTGGGTTCTCTCTTATTGATTGCTCTAGTCACTGGTCTTCAAAAATGCAATAGCAAATCCTCTATAGTTATGCCTTGGAAGAAATCATCAAGTGGGAAGAAGCATGTGACTGTCTGTATTGATTCTGAAATTTTGAAAGATGTGACAAGATTCAGCAGACAAGATCTTGAAGTGGCCTGTGAAGACTTCAGTAACATTATTGGCTCCTCTCCAGACAGTGTCGTCTACAAGGGAACCATGAAAGGTGGGCCTGAGATTGCTGTTATCTCACTGTGCATTAAAGAAGAAAACTGGACAGGATATCTTGAACTTTATTTCCAGAGAGAGGTAGCCGATTTGGGAAGAATAAAGCATGAGAATACAGGAAAATTACTGGGGTATTCTAGAGAGAGCACTCCATTCACAAGGATGCTTGTTTTTGAATATGCCTCAAATGGGACATTATCAGAACACCTCCATTATGGAGAAGGATGCCAGTTATCTTGGACAAGGAGAATGAAGATTATCATAGGCATTGCTAGGGGACTAGCATATCTTCACACTGAACTCCAACCACCATTTACCATATCCGAGTTGAATTCTAGTTCTGTATATCTTACAGATGATTTTTCTCCCAAGCTGGTCGATTTTGAAAGTTGGAAAGCAATTCTATCAAGGTCAGAAAAGAACTCAGGCTCTATCGGAAGCCAAGGTGCTATTTGTGTTCTTCCAAACTCTTTGGAAGCACGTCATCTAGATGTTCAGGGTAATATCTATGCCTTTGGGGTCCTTTTACTCGAAATAGTCAGTGGAAGACCCCCTTATTGCAAGGATAAAGGAAGCTTGCTTGAATGGGCCAAAGACTACCTCGAAATACCAGAAGCTATGTCATCTGTTGTGGACCCGGAATTGAAGAATTTTGGATTTGATGACCTCAAAGTAATATGTGAGGTGGTAAATCTTTGTATCCATCCAGACCAAACCAAGCTGCATTCTATAAAGGATATATGCACCATGCTAGAGACCAGAATTGACACATCGGTTTCGATTGATTTCAAGGCCTCTTCGCTGGCATGGGCTGAGCTTGCACTTCAATCATAA 1986 41.39 MKSLVSFQLFFCLISKLLFVAASDSFASDEVSVLTTFKEGIYEDPHLVFSNWNYLAADPCDWSGISCSPDGGHVVKLNISWASLKGFLAPELGQLHFLQELLLHGNGLIGVIPKEIGLLKNLRVLDLGGNLLSGLIPPEIGNLTNIMKINLESNGLTGRLPLELGNLMYLEELRLDRNKLQGTFPSNGNSNFTANDHGMYASSTNLAGFCRLSQLKLVDFSYNFFVGIIPKCLENLPRLSFQGNCLHINDTEQRTAMQCGGASPATSPRGTNVKSHRSAESKHQSTSKPAWLLALEIVTGTMVGSLLLIALVTGLQKCNSKSSIVMPWKKSSSGKKHVTVCIDSEILKDVTRFSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLGRIKHENTGKLLGYSRESTPFTRMLVFEYASNGTLSEHLHYGEGCQLSWTRRMKIIIGIARGLAYLHTELQPPFTISELNSSSVYLTDDFSPKLVDFESWKAILSRSEKNSGSIGSQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIVSGRPPYCKDKGSLLEWAKDYLEIPEAMSSVVDPELKNFGFDDLKVICEVVNLCIHPDQTKLHSIKDICTMLETRIDTSVSIDFKASSLAWAELALQS 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3680827 3685069 + Conep09aG0078500.1 Cone9ag0768 444931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0768 661 Gene3D Transferase(Phosphotransferase) domain 1 445 650 - -
Cone9ag0768 661 MobiDBLite consensus disorder prediction 257 274 - -
Cone9ag0768 661 FunFam Inactive receptor-like serine/threonine-protein kinase 337 444 - -
Cone9ag0768 661 FunFam Leucine-rich repeat receptor-like protein kinase 27 186 - -
Cone9ag0768 661 Pfam Protein tyrosine and serine/threonine kinase 367 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0768 661 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Cone9ag0768 661 MobiDBLite consensus disorder prediction 257 283 - -
Cone9ag0768 661 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Cone9ag0768 661 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cone9ag0768 661 ProSiteProfiles Protein kinase domain profile. 363 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0768 661 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Cone9ag0768 661 PANTHER PROTEIN MALE DISCOVERER 2 8 660 - -
Cone9ag0768 661 SUPERFAMILY Protein kinase-like (PK-like) 343 636 IPR011009 -
Cone9ag0768 661 Gene3D Ribonuclease Inhibitor 141 260 IPR032675 -
Cone9ag0768 661 SUPERFAMILY L domain-like 28 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0953 Cone-Chr6:5002568 Cone9ag0768 Cone-Chr9:3680827 1.74E-79 dispersed
Cone9ag0768 Cone-Chr9:3680827 Cone9ag0962 Cone-Chr9:4811402 4.21E-73 dispersed
Cone6ag0764 Cone-Chr6:3891222 Cone9ag0768 Cone-Chr9:3680827 0 wgd
Cone8ag0315 Cone-Chr8:1820271 Cone9ag0768 Cone-Chr9:3680827 1.14E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83174 PF01105 EMP24_GP25L 4.00E-50 CL0521 Cone PK