Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0772 ATGGAAGAGGAAATCAAACCGATAGGTGAACAGTATGCTGCTGACATTTCTTCCATAAGAAAAGCGCTGCTCCGCATCGAATCTTTCATAAACCGGACCCCTGTCCCGACCTTCGAATCTATAAATTCTATCTCAGCTATTTTTCAAATAGGTGCTTGCAATGCTGTATTTTCACTTGCCGATCACGAGGCTGCAAAAGGGGTTGTTACTCATAGCAGTGGGAACCATGCTGCAGCATTAGCTTTGGCAGCGAAAAACCGAGGAATCCCGACTTATATAGTAGTACCGAAAAATGCCCCAGCTTGCAAGGTCGAAATTATGGTGGTCGAGTTATCTGGTGTGAGGCCACAATGTAGTCAAGGGAGAGTTCTGCAAGGCAAGTTATTGAAGAAACTGGTGCAGCTCTTGTCCATCCCTATAATGAAGGTCGTATAA 435 44.83 MEEEIKPIGEQYAADISSIRKALLRIESFINRTPVPTFESINSISAIFQIGACNAVFSLADHEAAKGVVTHSSGNHAAALALAAKNRGIPTYIVVPKNAPACKVEIMVVELSGVRPQCSQGRVLQGKLLKKLVQLLSIPIMKVV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3693965 3694615 - Conep09aG0078900.1 Cone9ag0772 444935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0772 144 Gene3D - 50 107 IPR036052 -
Cone9ag0772 144 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 17 108 IPR036052 -
Cone9ag0772 144 Pfam Pyridoxal-phosphate dependent enzyme 43 107 IPR001926 -
Cone9ag0772 144 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 10 105 - GO:0000287(PANTHER)|GO:0003941(PANTHER)|GO:0005524(PANTHER)|GO:0008721(PANTHER)|GO:0018114(PANTHER)|GO:0030170(PANTHER)|GO:0030378(PANTHER)|GO:0070179(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0772 K12235 - - vvi:100247899 111.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0772 Cone-Chr9:3693965 Cone6ag0761 Cone-Chr6:3882209 6.29E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26