Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0775 ATGGCTTCTAAGCTCTTTGCGTTTGCTTGCTTACGGAATGAAAGCCGCACGGATTTATCTCCACGGCCACACTATCCCTCCATGCTCAGGTATCCGAAAGGTTTCTCACCTCTGGAGCAGAGCGTCCATGGATCAGAGACGAAAGCTGAGTTCTCCGTCATCGGAATGAGCTGCTCTGCTTGTGCTGGATCTGTGGAGAAGGCGATTAAGAGGCTTCCAGGAATACGTGAGGCTGTGGTTGATGTTTTGAATAACAGAGCTCAAGTCCTCTTCTATCCCACCTTCGTTAATGAGGAAACTATTCGCGAGACTATTCAAGATGTTGGATTTGAAGCCACCCTGATAAAAGATGAGACAGATGAGAAATCCACACATATATGCCGGATACGCATAAATGGAATGACTTGCACTACATGTTCCTCGACTGTGGAATCAGCCCTGCAAGCAATTCAAGGTGTACAGAAGGCCCAAGTGGCCTTAGCAACAGAAGAAGCAGAAGTTCATTATGATCCAAAAATTCTGAGCTATGCTCAAATCCTGGAAGCCATAGAAGAAACTGGATTTGAAGCCATTCTTCTAAGTACAGGAGGAGACATAAGCAAAATAGAGCTTAAAGTCAATGGCTTAGGGACCGAGAATTCCATAAAGATAATAGACGACTCTCTTCGAGCCCTTCCGGGAGTTGAAGCTATTGATATTTCCACAGAACTCAGCAAGGTTTCCCTTTCCTACAGACCAGATATGACTGGACCCAGAACTTTTATCAGAGTAATTGAGTCAGCTGGACCCTTCAAGGCAGTGATATTTCCAGGCGGTGGAGGTGGAGAAAGACAATACCATAGACACGGGGAAATTAAGCAATATTTTAAATCCTTTCTATGGAGCTTAGTTTTCACCATTCCTGTGTTTCTAACGTCTATGGTTTTTATGTATATTCCTGGAATTAAGCATGGATTGGAAACAAAAGTCATCAACATGCTGGATATCGGAATGATTTTGAGGTGGGTACTGTCCTCTCCAGTTCAATTCGTCATAGGCAGGCGATTTTACACGGGAGCCTACAAAGCATTACGCCATGGTTCTGCTAATATGGACGTTTTGATTGCCTTGGGAACAAATGCAGCTTACTTCTTTTCAGCCTACATAGTGTTGAGATCTGCTCTCTCCCCAGATTTCAAGGGTACAGATTTCTTCGAGACTAGCTCAATGCTTATTTCATTTATCCTGCTGGGAAAATATCTGGAGGTTTTAGCAAAGGGAAAGACCTCTGAAGCTATTGCGAAGCTAATGGACCTGGCACCCGAGACAGCAACATTGTTAACTCTGGATAATGAAGGAAATGTGATAAACGAGGAGGAGATTGACACTAGATTAATACAAAAGGATGACGTGATAAAGATTATTCCTGGAGCGAAAATAGCTTCAGATGGGTTTGTTTCATGGGGACAGAGCCATGTAAATGAGAGCATGATAACAGGAGAAGCACGGCCAGTTGCAAAAAGGAAGGGAGATGAAGTGATTGGAGGCACGGTGAATGAGAATGGAGTGTTGCATGTCAAGGCGACTCGAGTTGGTTCCGAGAGTGCTCTTGCACAAATTGTTCGGCTAGTTGAATCAGCCCAAATGGCTAAAGCTCCTGTGCAGAAGTTTGCTGATCGCATATCCAAATTTTTTGTGCCTCTTGTCATTTTACTAGCTTTTGTGACTTGGCTTTCATGGTTTTTAGCTGGGAAATACAATGGCTACCCAAAATCTTGGATTCCTTCTTCCATGGATAGCTTTGAGCTTGCCCTTCAGTTTGGGATATCTGTCGTCGTCATAGCTTGCCCTTGTGCTCTTGGCTTGGCTACCCCTACGGCTGTCATGGTTGGTACAGGAGTAGGTGCCTCTCAGGGTGTACTCATCAAAGGAGGTCAAGCTTTAGAAAGTGCACATAAGGTGAATTGCATCGTGTTTGATAAGACTGGAACTCTCACAATTGGGAAGCCAGTGATTGTCAGTAGTCGACTCTTAAATAAAATGTCTCCTCAAGAATTCTATGAACTCGTTGCTGCAACTGAGGTGAACAGTGAGCATCCAGTGGCCAAGGCCATTGTTGAGTATGCCAAGAAGTTCAGAGAAGACGAAGAGAACCCTGCCTGGCCACAAGCAAAGGACTTCATTTCTATTACTGGTCATGGAGTGAAGGCCACAGTTCATAACAAGGAAATAATAGTAGGAAACAAGACCTTAATGACAAATCACGATGTCATCATTCCTGTAGATGCTGATGAAATGCTCGCAGAAGCTGAAGATATGGCCCAAACCGGGATCTTGGTAGCTATAGATAGGCAACTGGTTGGAGTCTTGGCAATTTCTGATCCACTAAAACCAGCAGCACGTGAAGTCATTTCCATTCTCAAGTCAATGAATGTGAGAAGCATCATGGTAACAGGTGACAACTGGGGTACTGCCAATTCCATTGCCAAGGAAGTGGGAATCGAAACCATTATAGCAGAAGCCAAACCCGAGCATAAGGCAGAGAAAGTCAAGGATTTACAGGCTTCAGGTGGCACTGTAGCTATGGTGGGAGATGGAATCAACGACTCTCCAGCCCTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGAACAGACATAGCTATAGAGGCGGCTGATATTGTTCTTATGAGGAGCAACTTGGAGGATGTCATAACTGCCATAGACCTGTCTAGAAAGACCTTTTCGAGAATACGTCTCAATTACATCTGGGCTTTGGGTTACAACCTTCTCGGAATTCCAATCGCTGCTGGTGCCCTCTTCCCATCTACTGGATTCAGATTGCCACCATGGATTGCTGGAGCTGCAATGGCGGCTTCTTCTGTAAGTGTTGTTTGCTGTTCTCTTTTGTTGAAGAATTACAAGAGACCCAAGAAGCTAGACAATCTTATGATTCGTGGAATTGTGGTCCAGTGA 2958 44.56 MASKLFAFACLRNESRTDLSPRPHYPSMLRYPKGFSPLEQSVHGSETKAEFSVIGMSCSACAGSVEKAIKRLPGIREAVVDVLNNRAQVLFYPTFVNEETIRETIQDVGFEATLIKDETDEKSTHICRIRINGMTCTTCSSTVESALQAIQGVQKAQVALATEEAEVHYDPKILSYAQILEAIEETGFEAILLSTGGDISKIELKVNGLGTENSIKIIDDSLRALPGVEAIDISTELSKVSLSYRPDMTGPRTFIRVIESAGPFKAVIFPGGGGGERQYHRHGEIKQYFKSFLWSLVFTIPVFLTSMVFMYIPGIKHGLETKVINMLDIGMILRWVLSSPVQFVIGRRFYTGAYKALRHGSANMDVLIALGTNAAYFFSAYIVLRSALSPDFKGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDNEGNVINEEEIDTRLIQKDDVIKIIPGAKIASDGFVSWGQSHVNESMITGEARPVAKRKGDEVIGGTVNENGVLHVKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKFFVPLVILLAFVTWLSWFLAGKYNGYPKSWIPSSMDSFELALQFGISVVVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVSSRLLNKMSPQEFYELVAATEVNSEHPVAKAIVEYAKKFREDEENPAWPQAKDFISITGHGVKATVHNKEIIVGNKTLMTNHDVIIPVDADEMLAEAEDMAQTGILVAIDRQLVGVLAISDPLKPAAREVISILKSMNVRSIMVTGDNWGTANSIAKEVGIETIIAEAKPEHKAEKVKDLQASGGTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMRSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPKKLDNLMIRGIVVQ 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3710036 3714406 + Conep09aG0079200.1 Cone9ag0775 444938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0775 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 933 IPR023298 -
Cone9ag0775 985 Gene3D - 125 195 - -
Cone9ag0775 985 CDD HMA 50 113 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Cone9ag0775 985 SUPERFAMILY HMA, heavy metal-associated domain 196 262 IPR036163 GO:0046872(InterPro)
Cone9ag0775 985 Gene3D - 199 269 - -
Cone9ag0775 985 Pfam E1-E2 ATPase 432 629 - -
Cone9ag0775 985 Gene3D - 47 119 - -
Cone9ag0775 985 SUPERFAMILY HAD-like 650 962 IPR036412 -
Cone9ag0775 985 SFLD p-type atpase 633 908 IPR044492 -
Cone9ag0775 985 ProSiteProfiles Heavy-metal-associated domain profile. 200 266 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 NCBIfam heavy metal translocating P-type ATPase 364 965 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone9ag0775 985 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 982 - -
Cone9ag0775 985 NCBIfam HAD-IC family P-type ATPase 404 939 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag0775 985 SUPERFAMILY HMA, heavy metal-associated domain 44 118 IPR036163 GO:0046872(InterPro)
Cone9ag0775 985 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872(InterPro)
Cone9ag0775 985 FunFam Probable copper-transporting ATPase HMA5 760 913 - -
Cone9ag0775 985 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Cone9ag0775 985 SUPERFAMILY HMA, heavy metal-associated domain 124 195 IPR036163 GO:0046872(InterPro)
Cone9ag0775 985 Gene3D - 618 913 IPR023214 -
Cone9ag0775 985 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 SFLD Haloacid Dehalogenase 633 908 - -
Cone9ag0775 985 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 CDD HMA 129 190 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 PRINTS Copper-transporting ATPase signature 401 420 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase signature 833 850 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase signature 421 439 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase signature 349 368 - -
Cone9ag0775 985 PRINTS Copper-transporting ATPase signature 560 574 - -
Cone9ag0775 985 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Cone9ag0775 985 FunFam Copper-transporting ATPase HMA5 124 195 - -
Cone9ag0775 985 Pfam haloacid dehalogenase-like hydrolase 648 870 - -
Cone9ag0775 985 Gene3D - 419 541 - -
Cone9ag0775 985 Gene3D - 737 787 IPR023299 GO:0000166(InterPro)
Cone9ag0775 985 Gene3D - 658 736 IPR023299 GO:0000166(InterPro)
Cone9ag0775 985 CDD P-type_ATPase_Cu-like 290 967 - -
Cone9ag0775 985 NCBIfam copper ion binding protein 129 190 IPR006122 GO:0005507(InterPro)
Cone9ag0775 985 NCBIfam copper ion binding protein 48 112 IPR006122 GO:0005507(InterPro)
Cone9ag0775 985 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872(InterPro)
Cone9ag0775 985 FunFam Copper-transporting ATPase HMA5 46 117 - -
Cone9ag0775 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Cone9ag0775 985 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872(InterPro)
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Cone9ag0775 985 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0222 Cone-Chr12:1143241 Cone9ag0775 Cone-Chr9:3710036 1.32E-10 dispersed
Cone1ag0355 Cone-Chr1:2920289 Cone9ag0775 Cone-Chr9:3710036 2.22E-184 dispersed
Cone3ag1096 Cone-Chr3:29583312 Cone9ag0775 Cone-Chr9:3710036 2.42E-117 dispersed
Cone5ag1482 Cone-Chr5:9924778 Cone9ag0775 Cone-Chr9:3710036 8.82E-288 dispersed
Cone6ag1423 Cone-Chr6:11416895 Cone9ag0775 Cone-Chr9:3710036 1.08E-42 dispersed
Cone8ag0211 Cone-Chr8:1138352 Cone9ag0775 Cone-Chr9:3710036 1.19E-14 dispersed
Cone9ag0775 Cone-Chr9:3710036 Cone9ag1384 Cone-Chr9:10346429 5.50E-17 dispersed
Cone1ag0440 Cone-Chr1:3956128 Cone9ag0775 Cone-Chr9:3710036 0 transposed
Cone12ag0313 Cone-Chr12:1713702 Cone9ag0775 Cone-Chr9:3710036 0 wgd
Cone6ag0759 Cone-Chr6:3867984 Cone9ag0775 Cone-Chr9:3710036 0 wgd
Cone8ag0313 Cone-Chr8:1804426 Cone9ag0775 Cone-Chr9:3710036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0775 K17686 - rcu:8266455 1583.54