Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0786 ATGGAGGTTACTTGGACTGAACTGGAGGTGTTGGAGTGGGGTGAAGGGTACTACAATGGAGATATTAAGACAAGGAAAACAGTCCAATCCACTGAGTTGGATTATGAGCGAACGGGTTTGCAAAGGAGCAAACAATTGAGAGAACTTTACGAATCTCTCTCTGGCGATGAATCGAATAATCCACAACAAGCCAGAAGGCCTCCTGCTTCTTTATCCCCTGAAGATCTCACCAATACTGAGTGGTTGCCTGGAAGAACATTTGCAAATGGTGAACCAATTTGGCTATGCAATGCTCATTTTGCAGATAGTAAAAGTGCATCTATTCAGACCACAGTTTGCTTTCCGTATTTTGGAGGTGTGCTGGAATTGGTAATGGAGGGACTGGTTTTGGAGGACCCGGATCTCATTTCGCACCTTAAGACCTCTTTCTTGGAGGTTCCATATTCCATAGGCTTGAAGAATGTCAAATGCACCGCAAAAAACATAAGAAAAGAAGAAGACATCTTCTACTCCGCCCTTCGTCGCGAGACTCTAGACTCAGATGAGCAAAAAATTGCTTCTCCGGATAACAGTTGTAACGGGCTAGTGGGCCCATTTATGGTTGAAGAGATAAATGGAGTAGCTTCTCATGCACAAAGCTGGCAATTTATGGACGATGAGTTTAGTAACTGTGTCCTTTCCATGAGCTCAAGTGACTGTATTTCTCAAACATTTATAGAGACCGAAAAGATCGCCTCTACTCCTCCTGGGGAAAAAGTAAATGAGTATTTGCCGACATGTCAAGAGAAAAATGAAACAAAATTGCCTTCACTGGATCTTTGGAATGATAATTTACACTATCAAAGTATTCTATCTTCTCTTTTAAAGAGCTCACACCAGTTTATTTTGGGCCCACATTCCCAAAATTGTGTGAATGAATCAAGCTTTGTCAATTGGAAGAAAGAAAGAATACCAAGTTTCCAAAAACCGAAAGGCGCTACCCCACAAAATTTATTGAAAAAGATTTTGTTTGAAGTTCCTCAGATGCATTCTTGTGGCTTTCCCGCCACATCATCAGAAGCTGGTGAAATTGGGGTAAATAATGCATTATCAGAAAAGAAGGGAAGAGAAAAACTAAATGAAAGATTTTTTGTTCTAAGATCCCTTGCCCCTTCAATTTAA 1161 40.74 MEVTWTELEVLEWGEGYYNGDIKTRKTVQSTELDYERTGLQRSKQLRELYESLSGDESNNPQQARRPPASLSPEDLTNTEWLPGRTFANGEPIWLCNAHFADSKSASIQTTVCFPYFGGVLELVMEGLVLEDPDLISHLKTSFLEVPYSIGLKNVKCTAKNIRKEEDIFYSALRRETLDSDEQKIASPDNSCNGLVGPFMVEEINGVASHAQSWQFMDDEFSNCVLSMSSSDCISQTFIETEKIASTPPGEKVNEYLPTCQEKNETKLPSLDLWNDNLHYQSILSSLLKSSHQFILGPHSQNCVNESSFVNWKKERIPSFQKPKGATPQNLLKKILFEVPQMHSCGFPATSSEAGEIGVNNALSEKKGREKLNERFFVLRSLAPSI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3769883 3772988 + Conep09aG0080300.1 Cone9ag0786 444949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0786 386 PANTHER TRANSCRIPTION FACTOR TT8 6 386 - -
Cone9ag0786 386 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 143 IPR025610 -
Cone9ag0786 386 MobiDBLite consensus disorder prediction 53 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0786 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0423 Cone-Chr11:2115322 Cone9ag0786 Cone-Chr9:3769883 2.81E-62 wgd
Cone14ag0354 Cone-Chr14:1645099 Cone9ag0786 Cone-Chr9:3769883 8.84E-54 wgd
Cone15ag0391 Cone-Chr15:1829041 Cone9ag0786 Cone-Chr9:3769883 4.29E-53 wgd
Cone18ag1082 Cone-Chr18:7944818 Cone9ag0786 Cone-Chr9:3769883 4.15E-57 wgd
Cone6ag0782 Cone-Chr6:3984304 Cone9ag0786 Cone-Chr9:3769883 9.30E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47