Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0787 ATGGGTAGTGGTCATTTTCCGAAAGAAGGTTTTGGAAAGTCTGCCTTTGTGAAGAGAATCAGAGTAGTAGGAAAAGATATTTCCAATTCAATGATCGATCCTTCAAGCCAGTCTCTCACTGTTGATGTCGGAAACTCGGCTTGTTACGATGCCGTGAAAGCTCAAGGATGTAAAGAATGGGGCTTCTTTTATGTCACAAACCATGGTATCTCACAAAACTTGTTCGAAAAAGTTTGTTCGTTTTCCCGGAATATCTTCAACCTTCCCCAAGATTCCAAGCTGAAACTTGGTCCTTCTTCTGATCTGAAAACCTACACACCTCACTTCATAGCCTCTCCTTACTTTGAAAGCCTTAGAGTTTCTGGACCGGATTTCTTAGTCTCCGCAAAAAACTCTATCAACATGCTCTTCGACCAACCAAATTTCGAATTCAGCAAGCTAATGGATGAATACGGAAACAAGATGATGGAATTATCAAAGAGAATTATTTCCATAGTAGTTATGAGTTTAGGAGATGATTATGAGAAGAATTACTATGAAGCTGAGTTTAGTAAGTGTCATGGTTACTTGAGGATAGTTAATTATTCACCCCCAGAAAGTAACCAAAAAAAGGGTGAAATAGAAGGACTAGGAATGCATACTGATATGAGCTGTTTAACCATAGTCTACCAGGATGAGATCGGAGGACTTCAGATGAGGTCTAGAGAAGGTAAATGGATAGATATAAAACCATGTGAGAGTTGTCTAGTAGTTAATATTGGAGATCTTATGCAAGCTTGGAGTAATGGAAGACTGAAATCGTCCGAACATAGGGTTGTTTTGAAGCAATTAGTGCTGAACCGTCTTTCATTAGCATTTTTCTGGTGTTTCGAGGATGAAAAGGTTATATCAGCTCCGGATGAAGTTGTAGGAGAAGGAAACGTGAGGATGTATATGCCATTTGTCTGCGCAGAGTATGTTAAGTTTAGGGAAAGTAATGAGGAAGGTAAGTTTGAGAAAATTGGGTATACAGTGAAGGATTTTGCTTCCATGTGA 1035 39.13 MGSGHFPKEGFGKSAFVKRIRVVGKDISNSMIDPSSQSLTVDVGNSACYDAVKAQGCKEWGFFYVTNHGISQNLFEKVCSFSRNIFNLPQDSKLKLGPSSDLKTYTPHFIASPYFESLRVSGPDFLVSAKNSINMLFDQPNFEFSKLMDEYGNKMMELSKRIISIVVMSLGDDYEKNYYEAEFSKCHGYLRIVNYSPPESNQKKGEIEGLGMHTDMSCLTIVYQDEIGGLQMRSREGKWIDIKPCESCLVVNIGDLMQAWSNGRLKSSEHRVVLKQLVLNRLSLAFFWCFEDEKVISAPDEVVGEGNVRMYMPFVCAEYVKFRESNEEGKFEKIGYTVKDFASM 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3773745 3775415 - Conep09aG0080400.1 Cone9ag0787 444950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0787 344 Gene3D - 23 322 IPR027443 -
Cone9ag0787 344 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 186 291 IPR005123 -
Cone9ag0787 344 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 54 322 IPR050231 GO:0016706(PANTHER)
Cone9ag0787 344 Pfam Neprosin 1 61 IPR004314 -
Cone9ag0787 344 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 108 IPR026992 -
Cone9ag0787 344 SUPERFAMILY Clavaminate synthase-like 55 325 - -
Cone9ag0787 344 Pfam 2OG-Fe(II) oxygenase superfamily 192 289 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0787 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0787 Cone-Chr9:3773745 Cone8ag1163 Cone-Chr8:10074457 8.42E-32 dispersed
Cone17ag1047 Cone-Chr17:7904025 Cone9ag0787 Cone-Chr9:3773745 1.15E-15 transposed
Cone8ag1247 Cone-Chr8:10434579 Cone9ag0787 Cone-Chr9:3773745 1.44E-07 transposed
Cone11ag0424 Cone-Chr11:2120347 Cone9ag0787 Cone-Chr9:3773745 2.13E-57 wgd
Cone18ag1081 Cone-Chr18:7943176 Cone9ag0787 Cone-Chr9:3773745 1.22E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g316 . . . . . Bpe07g00105 . . . . . . . . . . . Bhi11g00395 . . . . . . . . . . . . . . . . Cone9ag0787 Lsi07g01416 Csa05g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006886 2 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 37