Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0790 ATGTCTTCACCAAGCAAACGCCGAGAGATGGATTTGATGAAATTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATAGTATGCAAGAGTTCTATGTTGATTTCCATGGACCCAAAGACAGCCCGTATCAAGGAGGTTTATGGAGGATTAGGGTGGAATTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGCTTTGTCAACAAAATCTACCATCCAAATGTAGATGAGATGTCTGGGTCGGTTTGTTTAGATGTTATCAACCAGACTTGGAGCCCCATGTTTGACCTGGTTAATGTATTTGAAGTGTTCCTGCCCCAGCTCCTACTGTACCCAAACCCATCTGATCCTCTGAACGGAGAAGCTGCCGCTTTAATGATGCGGGACCGTGCTTATTATGAACAAAAAGTGAAAGAATTTTGTGAGAAATATGCGAAGCCAGAAGACATTGAAGCTCCGTCAGAAGAGAAATCGAGCGATGAAGAGCTGAGTGAGGATGATTATGGGTCCGATGAAGATGCAGTTGCGGGAACAGCCGATCCTTAA 552 43.12 MSSPSKRREMDLMKLMMSDYKVEMINDSMQEFYVDFHGPKDSPYQGGLWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAYYEQKVKEFCEKYAKPEDIEAPSEEKSSDEELSEDDYGSDEDAVAGTADP 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3792131 3794711 - Conep09aG0080800.1 Cone9ag0790 444953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0790 183 SMART ubc_7 4 148 - -
Cone9ag0790 183 MobiDBLite consensus disorder prediction 156 175 - -
Cone9ag0790 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Cone9ag0790 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 24 133 - GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0006511(PANTHER)|GO:0061631(PANTHER)
Cone9ag0790 183 MobiDBLite consensus disorder prediction 146 183 - -
Cone9ag0790 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Cone9ag0790 183 CDD UBCc 7 143 IPR000608 -
Cone9ag0790 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Cone9ag0790 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Cone9ag0790 183 Pfam Ubiquitin-conjugating enzyme 9 142 IPR000608 -
Cone9ag0790 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0790 K10576 - - rcu:8287405 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0119 Cone-Chr16:678645 Cone9ag0790 Cone-Chr9:3792131 4.51E-93 dispersed
Cone2ag0289 Cone-Chr2:1500900 Cone9ag0790 Cone-Chr9:3792131 3.25E-17 dispersed
Cone2ag0890 Cone-Chr2:34785894 Cone9ag0790 Cone-Chr9:3792131 4.95E-97 dispersed
Cone6ag0788 Cone-Chr6:4010108 Cone9ag0790 Cone-Chr9:3792131 2.50E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0790 . . . . . . . . . . Bma05g00546 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127