Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0791 ATGGGTTTAGGGTCTTTAGATTGCCTTGACAATACTAGCTCGCATTTGGTGAAAGATGGTGTCATTATCAATGAAGCTCGTGATGAATACAAACTTAAACTCCGTTCCTCGTTCGATCAACTTCTTTCGGTTTTTCTGAAAGAAATTGAGTCGAGGGGCATTGTTAGGCCTATACCTGTAACGCTTGGTGATAAAGGGTCTATTGATTTGTTCAAATTGATGCTGGGTGTAAGAGATAGAGGGGGTTTTGAGGAGGTTTCGGAAAAAGGGTTGTGGTCTTTAGTGACTGAGGAGTTGGGTTTGGATCATGGCTTATCGGCTTCGGTGAAATTGATTTGTTGCAAGTATTTGAGTGAGTGGGCAAAGTGGTTAAGGGAGAACTACATTGATAGGAGAGTAGAAAATGAACAAGGGAATGAGACATTAGGATTAGCAACAGAGCTCAGAGATTTGTTATTTGATAGACTTCTCGAATTGAATTCGGACAAGGATTATGGGAACTGCATTGACCTTGTTGAAAATGAATCAAATTTTCCGTTAACAGAATCTAATGAATTTAGAATGGATGAAGAGGGCGAGAAATGCCAGAATGGTTGTTATGAAGAGAGAAGTCTTGAAGATGATGATGAGGAGGAGAACATTTGTGATAGCACTGAAGCAGAACCCATTGCTAGCATGAAAAATGTTGAATCACGTAAAAGAAAGAGAGAATCTTTATTGGGAATGGTGAATTGGGTGACTCAGGTTGCGAAGAATCCAGACGATCCTTCAATTGGGATGATTCCAGGGCCGTCTATGTGGAAAGATTACCGAGGCAACAGGGAGTTCTGGGTTCAGTTAATCAGTATAAAGAATGCACTGTTGCGAAGAAACCATATCAAGGCAATCAGTGAAGAGTCTCCCTTGCAGAATAAGCTAAAAATGCATCCATCCATGTACGAGGATGATATTGATAACAATCATCGGTCTATAGAAAGGTCAAGATGTAGCAAGAGACTTCTCACTTTAGTGAAACCACATTTATGCTCTTGTAGCAATTCTTGTCCAGCCACTCAATGTAAACCAAGCAATCCCAAAACAGAGGTGGAGAAGGACCAGAATAAGAAAGTACCATCAAATGCCGATTCACCAGCTCCAAAGACAACAATGGTTAGCCCTTTCGAGGAAGAATCTGTCGAAAAGGAAGTTTCTGTGGGACCCGAATTTCAAGCTATTGTCCCGGAATGGAATGGTTTCGTTTTTGAGAGCGACTCTAAATGGCTCGGGACAAAGGTCTGGCCTTTGGAAGGTGGAAAGCATGATTTTTTAATGGAATTCTACCTTATTGGACAAGGAAGAAGATATCCATGCAATTGTCAACTTCTGGGGTCTGTGGAATGTGTTAGATTTCACATTGCTGAAGAGAAGATGAGACTGAAGCTCGAGCTGGGTCCAGTCTTTTATCGTTGGAGATTTGATCAGATGGGAGAGGTTGTTTCACTTCAGTGGAGTGATGAAGAGGAGAAGAGGTTTAAGGATTTGATGAGATGTAATCTTCCCTCACAGAATAAGTGCTTTTGGGATGATGCATTTAAGTTGTTTCCAATGAAAACAAGGGAAGACTTGGTGAGCTACTACTTCAATGTGGTTCTTGTAAGGCGGAGAGCTTATCAGAATCGCGTGACGCCAAAAGATGTAGACAGTGATGATGATGAATCGGAGTTTGGATCTTTTGGTAGTTTTGGGGAAGAGGCGGTTAGACTTGCTGGTGGTGAGTCCAATTTCGTTGTATGTTTAGTGAACAAGCAATGCACAGATTTGGAGTAG 1806 41.47 MGLGSLDCLDNTSSHLVKDGVIINEARDEYKLKLRSSFDQLLSVFLKEIESRGIVRPIPVTLGDKGSIDLFKLMLGVRDRGGFEEVSEKGLWSLVTEELGLDHGLSASVKLICCKYLSEWAKWLRENYIDRRVENEQGNETLGLATELRDLLFDRLLELNSDKDYGNCIDLVENESNFPLTESNEFRMDEEGEKCQNGCYEERSLEDDDEEENICDSTEAEPIASMKNVESRKRKRESLLGMVNWVTQVAKNPDDPSIGMIPGPSMWKDYRGNREFWVQLISIKNALLRRNHIKAISEESPLQNKLKMHPSMYEDDIDNNHRSIERSRCSKRLLTLVKPHLCSCSNSCPATQCKPSNPKTEVEKDQNKKVPSNADSPAPKTTMVSPFEEESVEKEVSVGPEFQAIVPEWNGFVFESDSKWLGTKVWPLEGGKHDFLMEFYLIGQGRRYPCNCQLLGSVECVRFHIAEEKMRLKLELGPVFYRWRFDQMGEVVSLQWSDEEEKRFKDLMRCNLPSQNKCFWDDAFKLFPMKTREDLVSYYFNVVLVRRRAYQNRVTPKDVDSDDDESEFGSFGSFGEEAVRLAGGESNFVVCLVNKQCTDLE 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3797182 3800140 - Conep09aG0080900.1 Cone9ag0791 444954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0791 601 SUPERFAMILY ARID-like 35 127 IPR036431 GO:0003677(InterPro)
Cone9ag0791 601 Gene3D - 27 141 IPR036431 GO:0003677(InterPro)
Cone9ag0791 601 MobiDBLite consensus disorder prediction 351 384 - -
Cone9ag0791 601 CDD ARID 35 120 - -
Cone9ag0791 601 SMART bright_3 33 126 IPR001606 GO:0003677(InterPro)
Cone9ag0791 601 SMART ARID_2 29 121 - -
Cone9ag0791 601 SMART ELM2_2 396 447 IPR000949 -
Cone9ag0791 601 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 31 576 - -
Cone9ag0791 601 Pfam ARID/BRIGHT DNA binding domain 38 119 IPR001606 GO:0003677(InterPro)
Cone9ag0791 601 ProSiteProfiles ARID domain profile. 32 125 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0791 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0540 Cone-Chr6:2662307 Cone9ag0791 Cone-Chr9:3797182 2.35E-26 dispersed
Cone9ag0550 Cone-Chr9:2618445 Cone9ag0791 Cone-Chr9:3797182 7.72E-28 dispersed
Cone11ag0434 Cone-Chr11:2182942 Cone9ag0791 Cone-Chr9:3797182 1.31E-96 wgd
Cone14ag0369 Cone-Chr14:1724663 Cone9ag0791 Cone-Chr9:3797182 3.04E-120 wgd
Cone15ag0406 Cone-Chr15:1907204 Cone9ag0791 Cone-Chr9:3797182 1.41E-114 wgd
Cone18ag1072 Cone-Chr18:7879200 Cone9ag0791 Cone-Chr9:3797182 8.06E-80 wgd
Cone6ag0789 Cone-Chr6:4014721 Cone9ag0791 Cone-Chr9:3797182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46832 None None None None Cone TR