Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0798 ATGGTTAATGATCATGATCACCATCATAACTGGCAAGAGAGCCGATTCGTTGACTTCTACGCTTCTTCTTCTTCATCATCATCTTCATCATCATCTTCTTCTTTGAGATCATCTACTGTTCTTCCTCCAAGTCAAGGTCTTTCACTATCTCTTTCTTCAACAAACCCTTCCACTAGTACTACTTTTGGATTACAGACCTCCTTTGAACAGGTCAGTGATCAAGTTCTACAAAATCATGAGGATATGATCAAGCTCTTTGATCAAGAGCACGAGCAAGAGGATCATTTGAATATTTCACAAGATGGGTACTTGGGAAAATTTGAAAGTCTTCTCCATCAGCAACAAGTTGAGTTTTATTTACAGGTGAAGAACTGTAAGTACTTAAACGCAGCTCAGGACCTTCTCAACGAGTTCTGTAGCCTCAGTACACAGCCAGATGGTCAAGTACAAAACTTGCGTAGTACCAACCTGGAAGAGGAAAATCATCATGACGTGATGTGTACAAGTACTACTACTTCCTCAAGAATATCGAAGCAAACATTCAATTCCCTTGATTTCATTGAATTGCAGAAGAGAAGAAGATCCAATCTCTATTATCTACTAGAAGAGACTGAAAGAAGATACAAGCACTACGGCAACCAAATGAAAGCGACGGTGTCATCGTTTGAGGCGTTGGCCGGAAACGGGGCGGCGGCAGTGTACTCGGAGTTGGCCTCAAAGGCGATGTCGAGGCGTTTCAGGTGTCTAAAAGATGGGATATTGAGTCAAATTCAGTCAACAAGAAAGGCAAGGGGAGAAAAAGACCAGATTACCCCTGGCACTACCAATGGCGAGACTCCGAGGCTTAGAGTTCTTGATCTGGCTTTGAGGCAACAAAAAGCTTTCCAGCAATTTGGTTTGATGGAGAGCCATCCATGGAGGCCTCAACGCGGCCTTCCCGAACGATCTGTTTCCGTTCTCCGAGCTTGGCTTTTCGAACACTTTCTTCACCCGTATCCAAGCGATGTTGATAAACATATATTAGCCCGCCAAACCGGTCTTACAAGAAGCCAGGTGTCAAATTGGTTCATAAATGCAAGGGTGAGGCTGTGGAAGCCGATGGTGGAAGAAATGTACATGGAAGAAACAAAAGCTGGAAGAAGACAATATTCCCGACAAAAACAAAAACACAAGCAAAAACAACATCATGGTCATGCCATCCTCAGATGA 1209 43.34 MVNDHDHHHNWQESRFVDFYASSSSSSSSSSSSSLRSSTVLPPSQGLSLSLSSTNPSTSTTFGLQTSFEQVSDQVLQNHEDMIKLFDQEHEQEDHLNISQDGYLGKFESLLHQQQVEFYLQVKNCKYLNAAQDLLNEFCSLSTQPDGQVQNLRSTNLEEENHHDVMCTSTTTSSRISKQTFNSLDFIELQKRRRSNLYYLLEETERRYKHYGNQMKATVSSFEALAGNGAAAVYSELASKAMSRRFRCLKDGILSQIQSTRKARGEKDQITPGTTNGETPRLRVLDLALRQQKAFQQFGLMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLTRSQVSNWFINARVRLWKPMVEEMYMEETKAGRRQYSRQKQKHKQKQHHGHAILR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3829853 3832011 + Conep09aG0081600.1 Cone9ag0798 444961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0798 402 MobiDBLite consensus disorder prediction 260 279 - -
Cone9ag0798 402 FunFam BEL1-like homeodomain protein 4 309 371 - -
Cone9ag0798 402 MobiDBLite consensus disorder prediction 379 402 - -
Cone9ag0798 402 Coils Coil 373 393 - -
Cone9ag0798 402 SUPERFAMILY Homeodomain-like 307 374 IPR009057 -
Cone9ag0798 402 Pfam Associated with HOX 122 253 IPR006563 -
Cone9ag0798 402 MobiDBLite consensus disorder prediction 383 402 - -
Cone9ag0798 402 SMART HOX_1 306 370 IPR001356 GO:0003677(InterPro)
Cone9ag0798 402 ProSiteProfiles 'Homeobox' domain profile. 303 366 IPR001356 GO:0003677(InterPro)
Cone9ag0798 402 Pfam Homeobox KN domain 323 362 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0798 402 SMART prehox3 116 255 IPR006563 -
Cone9ag0798 402 CDD homeodomain 306 367 IPR001356 GO:0003677(InterPro)
Cone9ag0798 402 Gene3D - 301 381 - -
Cone9ag0798 402 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 393 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1218 Cone-Chr8:10314758 Cone9ag0798 Cone-Chr9:3829853 1.08E-68 dispersed
Cone9ag0798 Cone-Chr9:3829853 Cone9ag1286 Cone-Chr9:9611690 1.10E-63 dispersed
Cone12ag0290 Cone-Chr12:1567141 Cone9ag0798 Cone-Chr9:3829853 4.28E-111 wgd
Cone6ag0798 Cone-Chr6:4056769 Cone9ag0798 Cone-Chr9:3829853 2.15E-198 wgd
Cone8ag0284 Cone-Chr8:1635714 Cone9ag0798 Cone-Chr9:3829853 6.18E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46834 PF04116 FA_hydroxylase 4.60E-25 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0798 - - - 0.0