Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0805 ATGTCGGCAGCCATTTCCAACTTTCTATCTCTCAAGAAGCACGGGCTCTCTCTGTGGTGTCCTCACTCCCCTTCACTCAGTCAAACCACCCACCGGCCGTTTTCTATCTCCGTCCGAAGCTTCAGGCGAAGCTATGTCTCAGCCTCGTCCGATTTCGCGAATGAGAATAGAGAGTTTGTGATTGTTGGTGGTGGTAATGCTGCTGGTTATGCTGCTCGTACTTTTGTTGAACATGGAATGGCAGAAGGACGCCTCTGCATTGTGTCTAAAGAGGCTCATGCGCCTTATGAGCGTCCAGCCTTGACCAAAGGATACTTGTTTCCTCTAGACAAAAAGCCCGCTAGATTACCTGGTTTTCATACATGTGTTGGATCTGGTGGAGAAAGGCAAACTCCTGAGTGGTATAAGGAGAAAGGGATAGAAATGTTATATGAAGATCCAGTAACCAATATTGATATCAACAGCCAAACCCTGACAACGAATTCTGGAAAACTTCTCAAATATGGATCTCTCATAATTGCCACAGGATGTACAGCTTCTAGATTTCCAGATAAAATTGGAGGCAACCTTCCTGGGGTTCACTACATTCGGGACATTGCAGATGCAGATTCTCTAGTGACATCTTTGGAGAAGTCACAGAAAGTTGTTGTAGTTGGCGGTGGTTATATTGGCATGGAGGTTGCAGCAGCAGCTGTCGGTTGGAAGCTTGACACAACGATCATATTTCCTGAAGATCATCTTCTACAAAGGCTTTTTACTCCTTCACTAGCTAGAAAATACGAAGAGTTCTACGAACAAAATGGTGTTAAATTTTCCAAGGGTGTCTCAATAAAAAACATAGAAGCTGGTGCTAATGGTCGTGTAGCTGCTATTAAACTCGAGGATGAATCTACTATAGAAGCAGATACGGTAATCATAGGTATTGGAGCTAAACCTGCTGTAAGTCCATTTGAAAGTGTTGGGTTAAGTGATAATGTTGGTGGTATTCAGGTTGATGGTCAGTTTCGGACAAATATACCCGGGATCTTTGCAGTTGGAGATGTTGCAGCCTTCCCATTGAAAATGTATGATCGTATTGCTCGAGTTGAGCATGTTGATCATGCTCGTCGATCAGCACAGCATTGTGTTAAGTCATTACTGAGTGCGCATGCTCACACATATGATTATCTTCCTTACTTTTACTCAAGGGTGTTTGAGTATGAAGGCAGCCCTAGAAAAATATGGTGGCAATTCTTTGGAGACAATGTGGGTGAGACGATTGAGATTGGGAATTTTGATCCTAAGATTGCCACTTTCTGGATAGATTCCGGTAAACTCAAAGGAGTTCTTCTTGAAAGTGGAAGTCCTGCGGAATTTCAACTCCTTCCCGAACTTGCAAGGAGGCAGCCTAATGTCGATGAAGCCAAGCTTCAAAATGCCTCTTCAGTCGAGGAAGCACTTGAATTTGCGAGAAAATCATTATGA 1464 43.51 MSAAISNFLSLKKHGLSLWCPHSPSLSQTTHRPFSISVRSFRRSYVSASSDFANENREFVIVGGGNAAGYAARTFVEHGMAEGRLCIVSKEAHAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMLYEDPVTNIDINSQTLTTNSGKLLKYGSLIIATGCTASRFPDKIGGNLPGVHYIRDIADADSLVTSLEKSQKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEDHLLQRLFTPSLARKYEEFYEQNGVKFSKGVSIKNIEAGANGRVAAIKLEDESTIEADTVIIGIGAKPAVSPFESVGLSDNVGGIQVDGQFRTNIPGIFAVGDVAAFPLKMYDRIARVEHVDHARRSAQHCVKSLLSAHAHTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLLESGSPAEFQLLPELARRQPNVDEAKLQNASSVEEALEFARKSL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3866289 3869973 + Conep09aG0082300.1 Cone9ag0805 444968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0805 487 Gene3D - 392 483 IPR016156 -
Cone9ag0805 487 SUPERFAMILY FAD/NAD(P)-binding domain 54 354 IPR036188 -
Cone9ag0805 487 Gene3D - 60 375 IPR036188 -
Cone9ag0805 487 PRINTS FAD-dependent pyridine nucleotide reductase signature 327 349 - -
Cone9ag0805 487 PRINTS FAD-dependent pyridine nucleotide reductase signature 214 232 - -
Cone9ag0805 487 PRINTS FAD-dependent pyridine nucleotide reductase signature 301 317 - -
Cone9ag0805 487 PRINTS FAD-dependent pyridine nucleotide reductase signature 60 79 - -
Cone9ag0805 487 PRINTS FAD-dependent pyridine nucleotide reductase signature 168 186 - -
Cone9ag0805 487 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 371 IPR023753 GO:0016491(InterPro)
Cone9ag0805 487 Pfam Monodehydroascorbate reductase 3-like, C-terminal domain 390 471 IPR048618 -
Cone9ag0805 487 Gene3D - 182 309 IPR036188 -
Cone9ag0805 487 PANTHER APOPTOSIS-INDUCING FACTOR 1 58 474 IPR050446 GO:0005737(PANTHER)|GO:0016651(PANTHER)
Cone9ag0805 487 PRINTS Pyridine nucleotide disulphide reductase class-I signature 58 80 - -
Cone9ag0805 487 PRINTS Pyridine nucleotide disulphide reductase class-I signature 302 316 - -
Cone9ag0805 487 PRINTS Pyridine nucleotide disulphide reductase class-I signature 214 239 - -
Cone9ag0805 487 PRINTS Pyridine nucleotide disulphide reductase class-I signature 342 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0805 K08232 - - cit:102615220 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0239 Cone-Chr15:1126291 Cone9ag0805 Cone-Chr9:3866289 3.54E-10 dispersed
Cone2ag0118 Cone-Chr2:571195 Cone9ag0805 Cone-Chr9:3866289 8.87E-116 dispersed
Cone9ag0805 Cone-Chr9:3866289 Cone6ag0808 Cone-Chr6:4099019 3.66E-235 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34